On 1/30/20 13:17, Michael Lawrence wrote:
> That sucks. It was broken since it was added in 2017... now fixed.
Unfortunately these things tend to happen to stuff that doesn't have
examples or unit tests.
Thanks for the fix!
H.
___
That sucks. It was broken since it was added in 2017... now fixed.
On Thu, Jan 30, 2020 at 11:20 AM Pages, Herve wrote:
>
> On 1/30/20 11:10, Hervé Pagès wrote:
> > Yes poverlaps() is a good option, as mentioned earlier.
>
> Well actually not. Looks like it's broken:
>
> >
On 1/30/20 11:10, Hervé Pagès wrote:
> Yes poverlaps() is a good option, as mentioned earlier.
Well actually not. Looks like it's broken:
> poverlaps(GRanges("chr1:11-15"), GRanges("chr1:16-20"))
Error in isSingleNumber(minoverlap) : object 'minoverlaps' not found
H.
Yes poverlaps() is a good option, as mentioned earlier. I was just
commenting about doing something like:
out <- vector("numeric", length(x))
out[(which(foo(x))] <- 1
when you can just do:
out <- foo(x)
H.
On 1/30/20 10:56, Michael Lawrence wrote:
> What happened to just
What happened to just poverlaps()?
On Thu, Jan 30, 2020 at 10:34 AM Pages, Herve wrote:
>
> On 1/29/20 23:31, web working wrote:
> > Hi Herve,
> >
> > Thank you for your answer. pcompare works fine for me. Here my solution:
> >
> > query <- GRanges(rep("chr1", 4), IRanges(c(1, 5, 9, 20), c(2, 6,
On 1/29/20 23:31, web working wrote:
> Hi Herve,
>
> Thank you for your answer. pcompare works fine for me. Here my solution:
>
> query <- GRanges(rep("chr1", 4), IRanges(c(1, 5, 9, 20), c(2, 6, 10, 22)))
> subject <- GRanges(rep("chr1",4), IRanges(c(3, 1, 1, 15), c(4, 2, 2, 21)))
> out <-
Hi everyone,
I’d like to submit a package soon but am unsure about the versioning. I’m
expecting there to be some revisions to the code which will then later require
that I bump the version count to trigger the rebuild. Currently, I’m at v1.1.1
(GitHub). If/when the package is accepted, I’d
