Re: [Bioc-devel] Change citation reference

The citation should have been updated now: http://bioconductor.org/packages/3.11/bioc/html/vulcan.html Thanks for notification of the issue. Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton

Re: [Bioc-devel] Reverting on the 'master' branch

Except that it's impossible to have version 1.99.0 installed because the build fails. I will try to work on the bugs that I introduced to get the features in shape before the next Bioconductor release. Thanks all for your replies! Kind regards, Roel Janssen On Tue, 2020-03-03 at 15:42 +,

Re: [Bioc-devel] Reverting on the 'master' branch

Once a version has been made 'public', it's not possible to go backward -- R will say 'hey, you've got version 1.99.0 installed, so that's more recent than 1.13.0, so I won't update it'. So you're stuck with the version going forward. Martin On 3/3/20, 10:14 AM, "Bioc-devel on behalf of

Re: [Bioc-devel] Reverting on the 'master' branch

Hi Roel, I think at this point it makes sense to move forward. It is more trouble than it's worth to do "hard resets" and then edit version numbers manually. Or another thing you could do is, roll out some big changes before the next release ;) Best, Nitesh > On Mar 2, 2020, at 5:09 PM,

[Bioc-devel] Bioc2020: TODAY March 3rd is the last day to submit proposals for workshops/talks/posters

Reminder: TODAY March 3rd is the last day to submit proposals for Bioc2020 workshops/talks/posters! http://bioc2020.bioconductor.org/call-for-abstracts Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton

Re: [Bioc-devel] R CMD build error for 3.10 (but not 3.11)

It can take up to 24 from a push to be reflected on the build report. For release 3.10 (RELEASE_3_10 branch) we see a version number of 1.2.0 http://bioconductor.org/checkResults/release/bioc-LATEST/bigPint/ and For devel 3.11 (master branch) we see a version number of 1.3.1 as well

Re: [Bioc-devel] help: Adding a new branch with latest R version to package repository

Additional branches are not allowed on our git.bioconductor.org version (only master and the next RELEASE_X_Y) and you will not be able to push up to Bioconductor upstream. You can however add any additional branches you would like to your github repository. Cheers, Lori Shepherd

[Bioc-devel] help: Adding a new branch with latest R version to package repository

Hi, We try to publish a paper that based on ceRNAnetsim package (i am also developer of it) in development version of Bioconductor. But actually reviewers want to test our result via this package. Unfortunately, they could't

Re: [Bioc-devel] R CMD build error for 3.10 (but not 3.11)

Dear Lori: Thank you for this helpful advice. I did successfully now manage to change my keys and name on the git.credentials app you suggested on February 25. At that time, my development version was building but my release version was failing. So, I followed the instructions in the link you