Re: [Bioc-devel] proper way to define an S4 method for 'plot'

We'll discuss this and other issues at the developer forum on Thursday (12pm US Eastern) https://stat.ethz.ch/pipermail/bioc-devel/2020-March/016347.html. The builds are a really big mess at the moment http://bioconductor.org/checkResults/3.11/bioc-LATEST/, with many changes in R-devel causing

Re: [Bioc-devel] proper way to define an S4 method for 'plot'

At least with 2020-03-16 r77987 (Mac OS) I wasn't able to reproduce this. Btw, there's no real need for an S4 method in this case. An S3 method would work just as well. On Mon, Mar 16, 2020 at 4:12 PM Henrik Bengtsson wrote: > Maybe it's related to: > > * The plot() S3 generic function is now

Re: [Bioc-devel] proper way to define an S4 method for 'plot'

Maybe it's related to: * The plot() S3 generic function is now in package base rather than package graphics, as it is reasonable to have methods that do not use the graphics package. The generic is currently re-exported from the graphics namespace to allow packages importing it from there to

[Bioc-devel] proper way to define an S4 method for 'plot'

I just updated my R and I am getting into trouble with MLInterfaces maintenance. > BiocManager::install("MLInterfaces") *Bioconductor version 3.11 (BiocManager 1.30.10), R Under development (unstable)* * (2020-03-15 r77975)* *Installing package(s) 'MLInterfaces'* *Warning: unable to access

Re: [Bioc-devel] Cairo error in Windows server

I have just reinstalled Cairo on our builders and tested the install on both the 64-bit and 32-bit mode. Hopefully this should clear up in tomorrows build report. Please let us know if this continues to be an issue. Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer

[Bioc-devel] Cairo error in Windows server

Hello Bioc Community, The CHECK in the windows server throws an error message that is not seen in other platforms and local windows computer: Error: .onLoad failed in loadNamespace() for 'Cairo', details: call: library.dynam("Cairo", pkgname, libname) error: DLL 'Cairo' not found: maybe not

[Bioc-devel] Bioconductor Developers Forum - Thursday 19th March

Dear all, The next Bioconductor Developers' Forum is scheduled for Thursday 19th March at 09:00 PST/ 12:00 EST / 18:00 CET We will be using BlueJeans and the meeting can be joined via: https://bluejeans.com/114067881 (Meeting ID: 114 067 881) As part of this month's call I thought would be

Re: [Bioc-devel] R CMD build error for 3.10 (but not 3.11)

If you can make the changes just to fix the error in release than nitesh is right and it would be better to do that and follow his commands he sent earlier. Get Outlook for Android From: L Rutter Sent: Sunday, March 15, 2020 11:03:42 PM