Re: [Bioc-devel] help with Win10 TLS problem?

2020-03-18 Thread Hervé Pagès
mmh.. for some reason the original post in this thread is only showing up now in my mailbox i.e. way after Steffen's answer (and even if Steffen's answer includes the original post, I must confess that I didn't really pay attention to it) Anyway, based on that original post I see now that

[Bioc-devel] BiSeq package

2020-03-18 Thread Katja Hebestreit
Hello, I am Katja Hebestreit, and the maintainer of the package BiSeq. I saw that the package is deprecated for Bioc 3.11. Unfortunately I realized just now that the email in the description file is outdated, it should be katja.hebestr...@gmail.com. That's probably why I never received any

Re: [Bioc-devel] help with Win10 TLS problem?

2020-03-18 Thread Hervé Pagès
The getBridgeNames() function in BridgeDbR uses the following code to download the HTML page at https://bridgedb.github.io/data/gene_database/ url <- "https://bridgedb.github.io/data/gene_database/; library(RCurl) CURL_SSLVERSION_TLSv1_2 <- 6L opts <-

Re: [Bioc-devel] Change associated email/github

2020-03-18 Thread Turaga, Nitesh
Redirecting you to bioc-devel for a better response on this. > On Mar 18, 2020, at 3:51 PM, Russell Bainer wrote: > > Sorry, one last question. Is there a way to change the email associated with > my user on the support site? > > https://support.bioconductor.org/u/10923/ > > -R > > On Wed,

Re: [Bioc-devel] help with Win10 TLS problem?

2020-03-18 Thread Neumann, Steffen
Hi, can you get me the URL that wants to be downloaded ? The "tlsv1 alert protocol version" indicates that the proper solution might be to notify the server to reconfigure the web server supported TLS versions. Yours, Steffen On Wed, 2020-03-18 at 19:55 +0100, Egon Willighagen wrote: > Hi

[Bioc-devel] help with Win10 TSL problem?

2020-03-18 Thread Egon Willighagen
Hi all, in the BridgeDbR package I have a TSL issue, just on Windows10 [0]: > location <- getDatabase("Bacillus subtilis") Error in function (type, msg, asError = TRUE) : error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version Calls: getDatabase ... getBridgeNames ->

Re: [Bioc-devel] Change associated email/github

2020-03-18 Thread Turaga, Nitesh
I can just change the email for you. Can you tell me which email you'd like you account to be associated with? > On Mar 17, 2020, at 5:40 PM, Russell Bainer wrote: > > Thanks very much for the response. Can you recommend a way to do password > recovery? I no longer have access to the

Re: [Bioc-devel] Deploy a critical patch

2020-03-18 Thread Sean Davis
On Tue, Mar 17, 2020 at 11:48 PM Julian Flesch wrote: > Hi Bioc team, > > > I am the maintainer of the package /waddR/. > > We have had built issues on the active branch recently, due a dependency > being unavailable. After pushing a patch, the issues were resolved on > the devel branch. > > Is