[Bioc-devel] Request for activating Bioconductor repository account for Lumi and methyAnalysis package

2020-03-23 Thread Huang, Lei [CRI]
Dear Bioconductor team, We are the maintainers of Bioconductor packages Lumi (https://bioconductor.org/packages/release/bioc/html/lumi.html) and methyAnalysis (https://bioconductor.org/packages/release/bioc/html/methyAnalysis.html). We were trying to obtain Bioconductor Git credentials by

Re: [Bioc-devel] Issue Reproducing BioC 3.11 COHCAP Error Message

2020-03-23 Thread Charles Warden
Hi Everybody, Thank you again for your help! I think the issue for the COHCAP devel package has now been resolved: http://bioconductor.org/checkResults/release/bioc-LATEST/COHCAP/ I had somewhat similar error messages for sRAP (which is different than COHCAP), but I am OK with sRAP being

Re: [Bioc-devel] Problems with BiocCredentials

2020-03-23 Thread Turaga, Nitesh
Hi Saskia, The email it is registered to is freyta...@wehi.edu.au. So, you'll first have to "activate" your account before you can do anything else. https://git.bioconductor.org/BiocCredentials/account_activation/ Once you activate your account, please add your SSH keys. You will then be able

Re: [Bioc-devel] Bioconductor package IMMAN

2020-03-23 Thread Shepherd, Lori
I would do a git fetch --all # get all branches git pull upstream master # pulls changes from Bioconductor git server # resolve any merge conflicts that arise. It is good practice to always pull from origin and upstream before making any changes to code to make sure the code base is

Re: [Bioc-devel] Bioconductor package IMMAN

2020-03-23 Thread minoo ashtiani
Hi Lori, Thanks for the update. I edited the vignette in which the platform error comes from that. I updated the by using 1. git push origin master 2. command and it was OK, however when I wanted to run the second command line 1. git push upstream master 2. I faced