Re: [Bioc-devel] CNORfeeder building error

2020-04-02 Thread Shepherd, Lori
When I look at the git.bioconductor.org checkout of your package, There are no R functions and no man functions for those exports. Your commit on Mar 30 only updated the NAMESPACE and vignette. base) lori@lori-HP-ZBook-15-G2:~/b/Rpacks/CNORfeeder(master)$ grep -r "buildFeederObjectDynamic" *

[Bioc-devel] CNORfeeder building error

2020-04-02 Thread Enio Gjerga
Hello, I am the maintainer of the CNORfeeder package. When I updated the package I added a few other functions. However, from the building I get the following error: package ornamespace load failed for ‘CNORfeeder’ in namespaceExport(ns, exports): undefinedexports: *the names of the new

Re: [Bioc-devel] Development branch build error from celda

2020-04-02 Thread Shepherd, Lori
I think this is an intermittent connectivity issue and is safe to ignore. While today's build report has not yet officially posted, I check the report for you package and it seems to be all OK. Thank you for your diligence on investigating package ERRORs. Cheers, Lori Shepherd Bioconductor

Re: [Bioc-devel] Help with tokay2 errors

2020-04-02 Thread Shepherd, Lori
On quick glance into the logs on tokay2 it looks like it may be an issue with MotifDb and not your package. In merge_motif it doesn't get to evaluating the code as it is hung up on trying to load the MotifDb library. Once this library is called, There are numerous: *** recursive gc invocation

Re: [Bioc-devel] Final List of Deprecated Packages for Bioc3.11

2020-04-02 Thread Shepherd, Lori
Software package: DChIPRep and Workflow package: maEndToEnd User requested deprecation. Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263

Re: [Bioc-devel] Unable to update maintainer email address

2020-04-02 Thread Turaga, Nitesh
Hi, I've updated your email address to the one you are emailing from now. pierre.neuv...@math.cnrs.fr. Please "activate" you BiocCredentials account first and add SSH keys. Once you do that you'll be able to change the email on the description file.

Re: [Bioc-devel] Problems with Biocredentials

2020-04-02 Thread Turaga, Nitesh
Yes, that is the problem. I'm not sure how you have two accounts for two packages. It might be because you submitted both packages with different email addresses as maintainer, one from a "Perkins" account and the other from "wehi" account. I've fixed the issue. Please try again, and see that

[Bioc-devel] Unable to update maintainer email address

2020-04-02 Thread Pierre Neuvial
Hello, I am the maintainer of the MANOR package. This package is listed in "Unresponsive/not-maintained packages:" because I did not update my email after moving to my current position, and this email does not exist anymore. I understand that I need to update the email in the DESCRIPTION of the