[Bioc-devel] How to add an experiment to an empty MultiAssayExperiment file ?

2020-04-16 Thread Charles Plessy
Dear all, in the CAGEr pakcage, our main class, CAGEexp is a wrapper on the MultiAssayExperiment class. In a typical workflow, we first create a MultiAssayExperiment object with no experiment in, and then add the experiments one by one as the analysis proceeds. As the checks in

[Bioc-devel] Transfer Maintainership of a Package ClusterJudge

2020-04-16 Thread Adrian Pasculescu
Hi , I am the original maintainer of the ClusterJudge but my original email address (pascule...@lunenfeld.ca) is no longer valid. I need to continue maintaining the package under the new email address: a.pascule...@gmail.com I created a new github repo: https://github.com/apasculescu/ClusterJudge

Re: [Bioc-devel] rstan related build error on tokay2

2020-04-16 Thread Martin Morgan
Thanks Simo. As you know the Windows toolchain is in the process of updating. Do you have any insight into the RStan requirements under Rtools4 (which should support C++14)? Martin On 4/15/20, 5:32 PM, "Bioc-devel on behalf of Simo Kitanovski" wrote: Dear all, I have noticed

Re: [Bioc-devel] credentials/authors for MTseeker, biscuiteer, and data packages corresponding to each

2020-04-16 Thread Turaga, Nitesh
Hi Jacob, I've created your account. I'll email you account details in private. This should be solved now. Best, Nitesh > On Apr 16, 2020, at 9:45 AM, Morrison, Jacob wrote: > > Hi Nitesh, > > If you could use jacob.morri...@vai.org for the email, that would be great. > Once I have

Re: [Bioc-devel] credentials/authors for MTseeker, biscuiteer, and data packages corresponding to each

2020-04-16 Thread Morrison, Jacob
Hi Nitesh, If you could use jacob.morri...@vai.org for the email, that would be great. Once I have access, I'll go ahead and update the Maintainer field with my name and that email address. Thanks, Jacob From: Turaga, Nitesh Sent: Thursday, April 16, 2020 9:09

Re: [Bioc-devel] credentials/authors for MTseeker, biscuiteer, and data packages corresponding to each

2020-04-16 Thread Turaga, Nitesh
Once Jacob is given access, he should change the Maintainer field on the package DESCRIPTION for biscuiteer and biscuiteerData as well. Nitesh > On Apr 16, 2020, at 9:03 AM, Turaga, Nitesh > wrote: > > Hi Tim and Jacob, > > So, as I understand it, (in the ideal world) > > 1) Tim would

Re: [Bioc-devel] credentials/authors for MTseeker, biscuiteer, and data packages corresponding to each

2020-04-16 Thread Turaga, Nitesh
Hi Tim and Jacob, So, as I understand it, (in the ideal world) 1) Tim would maintain --> MTseekerData and MTseekerData 2) Jacob would maintain --> biscuiteer and biscuiteerData There are 2 aspects you need to understand here, 1) access 2) emails - Access, the access to the packages was given