Hi Stefano,
Thank you for your share.
Jianhong.
From: Stefano de Pretis
Date: Friday, April 17, 2020 at 3:18 PM
To: "Jianhong Ou, Ph.D."
Cc: "bioc-devel@r-project.org"
Subject: Re: [Bioc-devel] Got timeout for machv2 BUILD
HI,
We solved a similar issue for the INSPEcT package avoiding the
For some reasons the generation of the plots in the vignette is VERY
slow on machv2. 'R CMD build' actually completed... after 6h! This is
still under investigation.
Best,
H.
On 4/17/20 12:11, Jianhong Ou, Ph.D. wrote:
Hi,
I got timeout for my package motifStack in machv2. But I don't know
HI,
We solved a similar issue for the INSPEcT package avoiding the
parallelization in the computation of examples and vignettes. In our case
it caused the timeout in the Windows environment.
Best,
Stefano
Il giorno ven 17 apr 2020 alle 21:11 Jianhong Ou, Ph.D. <
jianhong...@duke.edu> ha
Hi,
I got timeout for my package motifStack in machv2. But I don't know what cuased
the issue.
Any help would be greatly appreciated.
Jianhong.
From: Jianhong Ou, Ph.D.
Sent: Wednesday, April 15, 2020 7:53 AM
To: bioc-devel@r-project.org
Subject: Got timeout
Yikes! Sorry everyone. That did not format like I thought it would!
Let's recap:
Bioconductor is excited to announce an opportunity to recognize those making
significant outstanding contributions to the Bioconductor community. The
Bioconductor project proudly launches the first call for
Bioconductor is excited to announce an opportunity to recognize those making
significant outstanding contributions to the Bioconductor community. The
Bioconductor project proudly launches the first call for Bioconductor Awards,
honoring various forms of contributions to the project. Four
Ya so I can include git hub packages, in cran submission policy.
*Thanks and Regards*
*Krishan Gupta*
*PhD16008PhD Scholar*
On Fri, Apr 17, 2020 at 10:23 PM Shepherd, Lori <
lori.sheph...@roswellpark.org> wrote:
> This mailing list is for Bioconductor package development and Bioconductor
>
This mailing list is for Bioconductor package development and Bioconductor
submissions not CRAN.
Bioconductor only allows dependencies from CRAN or Bioconductor and does not
allow github only repositories.
If you indeed meant to submit to CRAN you should check with CRAN's submission
policies
I want to build a new package to submit on CRAN, but my package has
two dependencies harmony and iCTC which are available only on github.
So now I can import these dependencies in description files.
Imports:
BiocManager,
caret,
klaR,
randomForest,
gbm,
devtools,
The current ERROR
"polygon edge not found"
is a Bioconductor builder issue having to do with fonts not being found.
We are working on a solution but for now you can ignore.
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics &
Dear Bioconductor team,
I met a building errors for our package, DeMixT 1.3.6, under Mac OS planform on
Apr 16th. And it shows failed to create vignettes.
Since R 4.0.0 no longer support OpenMP, I disabled OpenMP under Mac version and
it passed the building process after I committed the change
Hi Adrian,
You have to first activate your BiocCredentials account
https://git.bioconductor.org/BiocCredentials/.
Once you activate your account, you should be able to log in and add some SSH
keys. You'll be given access to the system once you add your SSH keys.
Also, please change the
Firstly, macv2 is R devel so to accurately test you should be using R 4.0.0
with Bioc 3.11 packages.
However, this ERROR is a Bioconductor builder issue having to do with fonts
not being found. We are working on a solution but for now you can ignore.
Lori Shepherd
Bioconductor Core Team
Hi,
My package, HiCBricks is showing failed builds on the Mac builder macv2.
I have checked the packaged on my Mac running Catalina 10.15 and R 3.6.1. The
build is ok.
Also, GitHub travis-ci build reports are fine.
The error message is “polygon edge not found”
Any help is much appreciated.
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