You can see package versions on the build system from
https://bioconductor.org/checkResults/devel/bioc-LATEST/index.html
clicking on 'installed pkgs' link in the center top table. iheatmapr is at
version 0.4.12.
I think what is happening is like
Hello Bioconductor team,
I am having issues accessing our labs Bioconductor repositories and also cannot
login to the Bioconductor credentials website.
I had a similar issue less than a month ago, which Nitesh from the core team
helped me resolve. At that time I was able to login to
We are done with the updates. If anyone has any issues submitting a new
package to the tracker please let us know.
We updated the single package builder to now require that ssh keys are added to
a github account since we utilize the ssh keys for access to maintaining your
package once
Dear Lori,
Thank you very much. I checked with our IT team and the server doesn't allow
this traffic out for security reasons. Is there a way to create a local
directory that has the information that the program is looking for and point
the proxy there?
Thank you,
Lisa
Hello all,
We are working on some updates to the Single package builder used for
submitting new packages. This shouldn't affect any packages already in the
submission queue only new incoming packages being submitted. The update should
not take long and we will announce when we are finished.
If the institution is behind a proxy there is a different ExperimentHub (and
AnnotationHub) option for setting the proxy.
try:
setExperimentHubOption("PROXY", )
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm
here's my sessionInfo() -- we don't even agree on lipidr version. I
presently don't have enough disk space to work
on both devel and release so I work only on devel branch. I'll ask you to
look over the different package versions
and see if you can get closer to mine and then fail to generate
Thanks Vincent.
I would like to debug the error, but I still cannot reproduce it.
SessionInfo, below, shows update to date versions! My Travis build also
works, with Bioc Devel and iheapmapr 0.4.12 (
https://travis-ci.org/github/ahmohamed/lipidr/jobs/696329028#L2718). What
am I missing?
>
I can reproduce the error, which arises from iheatmapr. Note that
http://bioconductor.org/checkResults/devel/bioc-LATEST/malbec1-R-instpkgs.html
shows that iheatmapr is 0.4.12 and on my system example(iheatmap) fails
with the
error you showed. In future please provide sessionInfo() result when
Dear all,
I've made a bioconductor package (CHETAH) at my previous workplace.
I've been away for a long time, but now I'm back at work (different place),
and want to fix issues that were submitted to my github in the meantime.
However, I have a new work laptop and need to upload a new SHH key to
Hi,
I would like to use the SeSAMe package to analyze methylation data that we've
generated. Unfortunately, I'm having difficulty installing the sesameData
package on our server. The server does not access the internet due to security.
I think I've installed all the dependencies. I was able
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