[Bioc-devel] Build issues under macOS

Hi, I've begun the submission of a new package [1], but I'm encountering some errors in the automated build under macOS on merida1 and would greatly appreciate any assistance. I've currently tried to build twice, once upon initial submission and once after updating the DESCRIPTION to remove a

[Bioc-devel] Bioconductor Release 3.12 Schedule Posted

The Bioconductor Release 3.12 Schedule has been posted and is tentatively scheduled for October 28th. Important deadlines can be found on the website and will be posted here and on the bioc-devel at r-project.org mailing list. As a quick summary: October 2: New package submission deadline

Re: [Bioc-devel] Hotfix rejected by git

Great, thanks a lot Nitesh. Do I need to push again? Many thanks, Mikhail From: Nitesh Turaga Date: Tuesday, 8 September 2020 at 16:34 To: "Shepherd, Lori" Cc: "Spivakov, Mikhail" , "bioc-devel@r-project.org" Subject: Re: [Bioc-devel] Hotfix rejected by git This email from

Re: [Bioc-devel] Hotfix rejected by git

Hi Mikhail, The RSS issue should be fixed now. Best regards, Nitesh > On Sep 8, 2020, at 7:45 AM, Shepherd, Lori > wrote: > > Yes I can see the updates 1.17.1 on the master branch on > git.bioconductor.org . We are looking into the > RSS git ERROR. > > We

Re: [Bioc-devel] Maintenance of MetaNeighbor package

Hi Everyone, Thank you for your prompt response. Stephan should be able to access the package as soon as he adds SSH keys to the server. I will be sending Stephan a private email regarding his credentials to access the Bioconductor git credentials application. Best, Nitesh > On Sep 3,

Re: [Bioc-devel] Pushing to Bioconductor repo gives errors

The RSS feed issue has been taken care of. The bug fix was issued today at 10 AM Eastern standard time. This should not be showing up on your push to the git server anymore. Best, Nitesh > On Sep 7, 2020, at 8:44 AM, Nitesh Turaga wrote: > > Your push went through. This is a different

Re: [Bioc-devel] maintainer access to scater

Hi Aaron, Alan should be able to access the package now. Please change the the DESCRIPTION file of the package to reflect the change in maintainer. Nitesh > On Sep 7, 2020, at 1:40 PM, Aaron Lun > wrote: > > For record-keeping purposes: > > We are transitioning maintainership of scater

Re: [Bioc-devel] fetch upstream of an existing package

The RSS error should be fixed. On Sep 8, 2020, at 7:58 AM, Shepherd, Lori mailto:lori.sheph...@roswellpark.org>> wrote: I RSS feed ERROR did not prevent the changes from being pushed to git.bioconductor.org . The changes should be reflected in either today's or

Re: [Bioc-devel] Hotfix rejected by git

Yes I can see the updates 1.17.1 on the master branch on git.bioconductor.org. We are looking into the RSS git ERROR. We only allow corrections to the current release (RELEASE_3_11) and devel (master) branches. We do not allow updates to past releases for legacy and reproducibility.

[Bioc-devel] Hotfix rejected by git

Hello! We’ve identified a small bug in our Chicago package that we’ve updated on the master branch and now wanted to update retrospectively in releases 3.9, 3.10 and 3.11. I initially updated and pushed just the master branch, and got this: $ git push remote: fatal: this operation must be