Re: [Bioc-devel] MPFE Bioconductor package

2020-09-16 Thread Stone, Matt
Hi Dr. Burden, The "ERROR" links on that report page link to the full check reports for each platform. Here is the report from malbec1, one of the Linux machines. http://bioconductor.org/checkResults/3.12/bioc-LATEST/MPFE/malbec1-checksrc.html If you're not familiar with the output of R CMD

Re: [Bioc-devel] MPFE Bioconductor package

2020-09-16 Thread Turaga, Nitesh
Hi Conrad, Sorry to hear you’ve had such a hard time with the Bioconductor GIT ecosystem. Please keep in mind that for a new build to be triggered you have to update the version number in the DESCRIPTION file of the package( The “x.y.z” version format needs the “z” to be incremented ). Also,

[Bioc-devel] seq2pathway install and build error

2020-09-16 Thread Yuxi Sun
Hello, We are writing on behalf of the development team for the Bioconductor package seq2pathway. There are two problems we are encountering that we wish to seek some insights from the team. 1) Our Windows installation throws this error message: Warning: *** someone has corrupted the Built

Re: [Bioc-devel] DECIPHER questions

2020-09-16 Thread Jiefei Wang
Hi Henry, It seems like you are using a Bioconductor package. Why not directly ask the author of the package(eswri...@pitt.edu)? JFYI, here is the link for the package, it seems like the author has written a lot of documentation for the package:

[Bioc-devel] Granting package access to other developers

2020-09-16 Thread Jason Ji
Dear Bioconductor maintainers, I am the developer and maintainer of the TSCAN package (https://bioconductor.org/packages/release/bioc/html/TSCAN.html). I wonder whether it is possible to grant write access of TSCAN package to Aaron Lun (infinite.monkeys.with.keyboa...@gmail.com), who is

[Bioc-devel] DECIPHER questions

2020-09-16 Thread Henry Luo
Hi, my name is Henry Luo. I am NCU master student from Taiwan. I need some help. Recently I do my project about probe design to detect environmental bacteria, and I have used DECIPHER package on my R session. Today I do my progress report to my Professor. Professor don't know whether DECIPHER

Re: [Bioc-devel] Packagebuilder skips building of MsCoreUtils package

2020-09-16 Thread Rainer Johannes
Thanks Lori, yes, it seems to be OK now cheers, jo Johannes Rainer, PhD Eurac Research Institute for Biomedicine Via Galvani 31, I-39100 Bolzano, Italy M +39 327 4075490 T +39 0471 055 491 email: johannes.rai...@eurac.edu github: jorainer twitter: jo_rainer Legal Seat Viale Druso 1, I-39100