Re: [Bioc-devel] "there is no package called 'BSgenome.Athaliana.TAIR.TAIR9'"

This warning * checking dependencies in R code ... WARNING '::' or ':::' import not declared from: ‘BSgenome.Athaliana.TAIR.TAIR9’ means that you have used BSgenome.Athaliana.TAIR.TAIR9 in your code, but you have not declared it in your DESCRIPTION file, either as Imports: or Suggests:. Since

Re: [Bioc-devel] Sorry confused about version numbers etc...

The version scheme is outlined at https://bioconductor.org/developers/how-to/version-numbering/ Within a 'release', the version x.y.z is always bumped in the z field. You are at 1.8.0 in release, so the version bump is to 1.8.1, 1.8.2, ... Meanwhile, in devel you were at 1.9.0, so the version

[Bioc-devel] Sorry confused about version numbers etc...

Hi, Sorry to be a pain but I'm getting in quite a muddle - probably due to inexperience as a developer. So basically, I have made a small but important change to my package drawProteins. The addition of 10 lines to the function extract_feat_acc() in file called extract_from_api.R I

[Bioc-devel] "there is no package called 'BSgenome.Athaliana.TAIR.TAIR9'"

My package trena fails on all platforms with this error: there is no package called ‘BSgenome.Athaliana.TAIR.TAIR9’ Is Arabidopsis no longer supported by bioc? I remember some discussion related to this over the summer. - Paul ___

Re: [Bioc-devel] Lost access to my package "AffiXcan", and gained W permissions to empty repo "AffiXan"

Hi Alessandro, This package seems to have been added with the wrong name in our BiocCredentials system. It is fixed now. Please check it on your end. Best, Nitesh > On Oct 11, 2020, at 9:08 AM, Alessandro Lussana via Bioc-devel > wrote: > > Hi, > > Unexpectedly I found to have lost

Re: [Bioc-devel] How to handle namespace/import of Rcurl

The message is trying to say that RCurl has not been declared in the DESCRIPTION file; add Imports: RCurl to the DESCRIPTION. I know that you indicate that you have done this already, but it is not present in the current DESCRIIPTION file, and it is the reason for the current warning message.

[Bioc-devel] How to handle namespace/import of Rcurl

Hi Devel I've recently added a function which relies on Rcurl but I'm having trouble figuring out how to handle it in the namespace/import since it behaves differently from other packages I rely on. As seen here I