Re: [Bioc-devel] Time-out error on Ubuntu 20.04 build

2020-10-14 Thread Mike Smith
I think this information will probably just confuse the issue, but I've successfully checked out ncRNAtools and run R CMD build / check without issue on my Ubuntu 20.04 test machine. It took a couple of minutes. Rolling back to an older version prior to the SSL patch would lead to failure and the

Re: [Bioc-devel] Add Bioconductor Maintainer Questions

2020-10-14 Thread Nitesh Turaga
Thanks Elana. Melanie, you will receive a private email from me about your BiocCredentials login credentials. Once you add your SSH keys to that account, you’ll get access to the package. Best, Nitesh > On Oct 14, 2020, at 3:49 PM, Elana Fertig wrote: > > I can approve Melanie. > >

Re: [Bioc-devel] Add Bioconductor Maintainer Questions

2020-10-14 Thread Elana Fertig
I can approve Melanie. Sent from my iPhone On Oct 14, 2020, at 3:45 PM, Nitesh Turaga wrote:  Hi Melanie, I’m happy to give you access. But I need confirmation from one of the authors to give you access. Since Elana is on leave, can Thomas Sherman respond? Best, Nitesh On Oct 14, 2020,

Re: [Bioc-devel] Add Bioconductor Maintainer Questions

2020-10-14 Thread Nitesh Turaga
Hi Melanie, I’m happy to give you access. But I need confirmation from one of the authors to give you access. Since Elana is on leave, can Thomas Sherman respond? Best, Nitesh > On Oct 14, 2020, at 2:59 PM, Melanie Loth wrote: > > Hello, > > I need to get access to the CoGAPS package on

[Bioc-devel] Add Bioconductor Maintainer Questions

2020-10-14 Thread Melanie Loth
Hello, I need to get access to the CoGAPS package on Bioconductor to make changes to the license prior to the next update. The current maintainer, Elana, is on maternity leave. Due to her scarce availability, I want to make the process smooth on her end by getting a list of the necessary

[Bioc-devel] Access to

2020-10-14 Thread Melanie Loth
[[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel

[Bioc-devel] Project-wide code of conduct for Bioconductor

2020-10-14 Thread Vincent Carey
Bioconductor has published a project-wide code of conduct: http://bioconductor.org/about/code-of-conduct/. We invite all members of the community to familiarise themselves with it. The Bioconductor community values - an open approach to science that promotes the sharing of ideas, code, and

Re: [Bioc-devel] Fwd: BioC 3.12 coming soon, package a4 and a4Base need your attention!

2020-10-14 Thread Martin Morgan
3.11 is the current release version. Commits to the current release version were disabled yesterday. https://bioconductor.org/developers/release-schedule/ You want to push changes to the devel ('master') branch. Martin On 10/14/20, 5:34 AM, "Bioc-devel on behalf of Laure Cougnaud"

Re: [Bioc-devel] Fwd: BioC 3.12 coming soon, package a4 and a4Base need your attention!

2020-10-14 Thread Laure Cougnaud
Hi Martin, Ok I miss this information. Thanks for the information, I will push new changes to the master branch. Thanks again for the support, Regards, Laure Cougnaud, Statistical Consultant, OpenAnalytics - Original Message - > From: "Martin Morgan" > To: "Laure Cougnaud" ,

Re: [Bioc-devel] multicrispr: builds fine on all test platforms except one (nebbiolo)

2020-10-14 Thread Stuart Lee
I have the same thing - looks like a problem with BSgenome.Hsapiens.UCSC.hg19 and friends on the new Ubuntu machine From: Bioc-devel on behalf of Bhagwat, Aditya Sent: Wednesday, 14 October 2020 8:09 PM To: bioc-devel@r-project.org Subject: [Bioc-devel]

[Bioc-devel] Fwd: BioC 3.12 coming soon, package a4 and a4Base need your attention!

2020-10-14 Thread Laure Cougnaud
Dear Bioc-devel, I am experiencing some issues to push changes to the release 3.11 branch of my package (a4Base) in Bioconductor, in order to fix the errors mentioned in the [ https://bioconductor.org/checkResults/3.11/bioc-LATEST/a4Base/ | build/check report for BioC 3.11 ] . I could

[Bioc-devel] multicrispr: builds fine on all test platforms except one (nebbiolo)

2020-10-14 Thread Bhagwat, Aditya
Dear BiocCore, multicrispr is building fine on all test platforms except one (nebbiolo): Could the build error be arising from some