Re: [Bioc-devel] Outdated Bioconductor's config.yaml

2020-10-30 Thread Kern, Lori
Yes. Thank you for pointing it out. I will update immediately. Expect the changes to propagate over the next hour or so. Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York

[Bioc-devel] Outdated Bioconductor's config.yaml

2020-10-30 Thread Nuno Agostinho
Hey everyone! In https://bioconductor.org/config.yaml , r_version_associated_with_devel is "4.0.0", even though the devel version 3.13 requires R 4.1. Could you please update this? As I use this value for automated unit testing, I would also like to know

[Bioc-devel] News: Extended submission deadline for EuroBioc2020

2020-10-30 Thread Kevin RUE
Hello community! The EuroBioc2020 submission deadline is extended to Monday, November 16th! The organising committee welcomes submissions for talks, workshops, posters, and birds-of-a-feather session topics. The scope for submissions is far from limited to Bioconductor packages; we welcome

Re: [Bioc-devel] skipped, ERROR

2020-10-30 Thread Kern, Lori
Is your package in the submission queue, I see it is. It is best to ask questions there so it can be tracked by your reviewer. Packages submitted at this phase will be officially released in spring and therefore should be tested against all devel versions of packages. The current Bioc devel

Re: [Bioc-devel] BiocManager and R-devel

2020-10-30 Thread Kasper Daniel Hansen
Im happy to hear this has been addressed in git. On Fri, Oct 30, 2020 at 12:22 PM Martin Morgan wrote: > Thanks; the version of BiocManager in git has > > > library(BiocManager) > Bioconductor version '3.11' is out-of-date; the current release version > '3.12' > is available with R version

Re: [Bioc-devel] BiocManager and R-devel

2020-10-30 Thread Martin Morgan
Thanks; the version of BiocManager in git has > library(BiocManager) Bioconductor version '3.11' is out-of-date; the current release version '3.12' is available with R version '4.0'; see https://bioconductor.org/install and will be released in the next month. The rationale for telling you

[Bioc-devel] BiocManager and R-devel

2020-10-30 Thread Kasper Daniel Hansen
Installed R-devel as of today. I have a previous version of Bioconductor installed in site-library. I then do install.packages("BiocManager") # installs version 1.30.10 > library(BiocManager) Bioconductor version '3.11' is out-of-date; the current release version '3.12' is available with R