Re: [Bioc-devel] Error when building in command line but not in RStudio

Let's keep this conversation on the bioc-devel mailing list where it started. On 3/25/21 5:31 PM, Xinan Yang wrote: Herve, on March 25, 2021 3:58 PM Hervé Pagès wrote: With Bioconductor packages you push changes to your package git repo at >

Re: [Bioc-devel] Package failed build on Windows - couldn't load related ExperimentHub dataset

Hi Alan, I just went on tokay2 and was able to manually run 'R CMD build' and 'R CMD check' on EWCE and they produced clean output. See below. So I'm not sure what happened earlier with the SPB. Some sort of hiccup? Can you bump the package version again? That will trigger another build so

Re: [Bioc-devel] Error when building in command line but not in RStudio

On 3/25/21 1:50 PM, AJ Kinstlick wrote: Any help on this would be greatly appreciated, but once again I'm not sure it's even necessary if I can just build the package in RStudio and submit it to Bioconductor. That's not how Bioconductor works. With Bioconductor packages you push changes to

[Bioc-devel] Error when building in command line but not in RStudio

Hi all, I'm trying to upgrade a package that uses R and python together with temp files generated by the system. I encounter an error when building via the command line, but can build the package with no errors using RStudio. *Do I need to worry about any command line errors if the package can

Re: [Bioc-devel] Please change maintainer of chipenrich and chipenrich.data packages

Hi Nitesh, To echo Kai's response, I don't have a problem either. Again, sorry for the confusion, I didn't realize I'd retain my access. Thanks, Raymond Raymond Cavalcante, PhD Bioinformatics Analyst Epigenomics Core and Bioinformatics Core Biomedical Research Core

Re: [Bioc-devel] Please change maintainer of chipenrich and chipenrich.data packages

I believe Kai and yourself both have access already. Is there a problem where either of you aren’t able to access the package? Best, Nitesh From: Raymond Cavalcante Date: Thursday, March 25, 2021 at 7:35 AM To: Nitesh Turaga Cc: "bioc-devel@r-project.org" , "wangd...@umich.edu" Subject:

Re: [Bioc-devel] Please change maintainer of chipenrich and chipenrich.data packages

I believe Kai and yourself both have access already. Is there a problem where either of you aren’t able to access the package? Best, Nitesh From: Raymond Cavalcante Date: Thursday, March 25, 2021 at 7:35 AM To: Nitesh Turaga Cc: "bioc-devel@r-project.org" , "wangd...@umich.edu" Subject:

Re: [Bioc-devel] Please change maintainer of chipenrich and chipenrich.data packages

I believe Kai and yourself both have access already. Is there a problem where either of you aren’t able to access the package? Best, Nitesh From: Raymond Cavalcante Date: Thursday, March 25, 2021 at 7:35 AM To: Nitesh Turaga Cc: "bioc-devel@r-project.org" , "wangd...@umich.edu" Subject:

Re: [Bioc-devel] Please change maintainer of chipenrich and chipenrich.data packages

Hi, Yes, you may retain your ability to push upstream (git.bioconductor.org) as well. The only requirement is only ONE maintainer is listed on the Package DESCRIPTION file, usually the one who takes full responsibility for the maintenance. There is no concept of co-maintainers, only

Re: [Bioc-devel] Please change maintainer of chipenrich and chipenrich.data packages

Hello, I recently saw a thread on bioc-devel (Re: [Bioc-devel] adding maintainers to SpatialExperiment repo), where additional people were added to the repo and allowed to push upstream. Perhaps I was operating under old terminology, but when I asked for a co-maintainer, my intention was that

Re: [Bioc-devel] autonomics DOI link inactive

This is a known issue and has not yet resolved sorry about that. Martin On Thu, Mar 25, 2021 at 6:34 AM Bhagwat, Aditya < aditya.bhag...@mpi-bn.mpg.de> wrote: > Dear bioc-devel, > > Thank you for having autonomics< > https://bioconductor.org/packages/devel/bioc/html/autonomics.html> on >

[Bioc-devel] autonomics DOI link inactive

Dear bioc-devel, Thank you for having autonomics on bioc-devel. The DOI link seems to be inactive, is this normal: https://doi.org/doi:10.18129/B9.bioc.autonomics Thankyou, Aditya [[alternative HTML version deleted]]

[Bioc-devel] Package failed build on Windows - couldn't load related ExperimentHub dataset

Hi all, I am working on the development of [EWCE](https://github.com/NathanSkene/EWCE) which I am currently trying to get accepted to [Bioconductor](https://github.com/Bioconductor/Contributions/issues/1904#). Upon sumission checks, there still seems to be a Windows specific issue running