Re: [Bioc-devel] Submit a package via Gitlab

2021-09-17 Thread Nitesh Turaga
Hi Jiyuan, You cannot submit a package through Gitlab. Our submission process requires a Github based contribution. If you have trouble importing your package, please checkout this article,

Re: [Bioc-devel] EXTERNAL: Bioconductor build system using old commit

2021-09-17 Thread Marcel Ramos
Hi Eric, This is the devel build report and it includes a commit from Mon Aug 16: https://bioconductor.org/checkResults/devel/bioc-LATEST/slinky/ If you need to patch the release version as well, follow the guide that Jim kindly

[Bioc-devel] Submit a package via Gitlab

2021-09-17 Thread Jiyuan Fang
Dear Sir/Madam, May I ask whether we can submit an R package to Bioconductor if it is in Gitlab not Github? I tried once but failed as shown in the issue. https://github.com/Bioconductor/Contributions/issues/2296 Best, Jiyuan [[alternative HTML version deleted]]

Re: [Bioc-devel] Bioconductor build system using old commit

2021-09-17 Thread James W. MacDonald
You are pushing to the master repo, but then are checking the build results from the RELEASE_3_14 branch. Are you also checking out the release branch and making changes/pushing there as well? http://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/ Best, Jim

Re: [Bioc-devel] Bioconductor build system using old commit

2021-09-17 Thread James W. MacDonald
Err. check that. Release is 3.13, so you should be checking out RELEASE_3_13 -Original Message- From: James W. MacDonald Sent: Friday, September 17, 2021 2:23 PM To: 'Kort, Eric' ; bioc-devel@r-project.org Subject: RE: Bioconductor build system using old commit You are pushing to the

[Bioc-devel] Bioconductor build system using old commit

2021-09-17 Thread Kort, Eric
Good day. I have made updates to my package, slinky. I pushed my changes both to my github rep, and the Bioconductor git repository. My remotes are set up as follows: > git remote -v origin https://github.com/vanandelinstitute/slinky (fetch) origin