Re: [Bioc-devel] EXTERNAL: LazyData: false and accessing data in the YAML section of an Rmd document

2021-11-18 Thread Witold Wolski
I guess I failed to explain: In the yaml section of the rmarkdown I can only use a single R expression; i.e., I can not write: ``` configuration: !r data('somedata', package="xyz"); somedata$uvw ``` because these are two expressions. I could write: xyz::somedata$uvw So to rephrase my

Re: [Bioc-devel] EXTERNAL: LazyData: false and accessing data in the YAML section of an Rmd document

2021-11-18 Thread Marcel Ramos
Hi Witold, I am not sure what the use case is for loading data in the yaml header. If you're swapping out data for your vignettes, perhaps your introduction chunks could contain the code to load the data. In any case, I recommend that you use `data("dataset", package = "package")` to load the

[Bioc-devel] LazyData: false and accessing data in the YAML section of an Rmd document

2021-11-18 Thread Witold Wolski
Hi, I with BiocCheck I am getting a warning that my packages uses LazyData: true. So far some of the package vignettes loaded the data in the params section of the Rmd file e.g., --- title: ... ... params: configuration: !r data(prolfqua::data_ionstar);

Re: [Bioc-devel] Git recognizes me but denies access

2021-11-18 Thread Philipp A.
My addresses are phil.ange...@gmail.com (not philipp) and flying-sh...@web.de. I’ll add a key as soon as I’m able to log in. Am Mo., 15. Nov. 2021 um 15:56 Uhr schrieb Nitesh Turaga < nturaga.b...@gmail.com>: > You have to activate the account at >