Re: [Bioc-devel] error on R CMD check

2022-12-09 Thread Hervé Pagès
Hi, IFAA now passes BUILD and CHECK on all platforms on the BioC 3.17 build report:   https://bioconductor.org/checkResults/3.17/bioc-LATEST/IFAA/ The package is now available in BioC 3.17 via BiocManager::install():   https://bioconductor.org/packages/3.17/IFAA Except on Windows. But

Re: [Bioc-devel] Packages failing Development build due to LaTex problem in .Rnw vignette

2022-12-09 Thread Henrik Bengtsson
Yes, it was just fixed in R-devel, cf. https://bugs.r-project.org/show_bug.cgi?id=18443. /Henrik On Fri, Dec 9, 2022 at 7:38 AM Lluís Revilla wrote: > > Hi Rory, > > There was a recent change in R devel ( > https://cran.r-project.org/doc/manuals/r-devel/NEWS.html): > - sessionInfo() records

Re: [Bioc-devel] Packages failing Development build due to LaTex problem in .Rnw vignette

2022-12-09 Thread Lluís Revilla
Hi Rory, There was a recent change in R devel ( https://cran.r-project.org/doc/manuals/r-devel/NEWS.html): - sessionInfo() records (and by default prints) the system time zone as part of the locale information. It was reported a couple of days ago in the R-devel mailing list by Henrik Bengtsson,

[Bioc-devel] Packages failing Development build due to LaTex problem in .Rnw vignette

2022-12-09 Thread Rory Stark via Bioc-devel
My packages are failing in the Development build due to something going wrong processing the .Rnw vignettes. Looking around I see a number of other packages with similar errors. They mostly include this error: LaTeX errors: ! Missing $ inserted. $ l.4064 \item Time zone