Agree with Lori. If you have tabulated data, csv is better than rda
because it's plain text and can easily be imported by many software, not
just R. People can also use an editor or command line tool like grep or
head to inspect the file. OTOH rda/rds files are R specific so can only
be used
I am glad you brought this up here, and I welcome further discussion on
this mailing list. It is important to understand the constraints on
development
that arise from Bioconductor's package guidelines.
I don't think we want to change the limits on package payload size without
understanding the
Hi Adam,
I also got this problem, and I would like some input from Bioc Core
Team. I worked around it by writing a minimal vignette in the main
branch. Then I made a documentation branch, where I have the same code
as in main branch, but with more elaborate vignettes used to build a
pkgdown
Hi Adam,
I also got this problem, and I would like some input from Bioc Core
Team. I worked around it by writing a minimal vignette in the main
branch. Then I made a documentation branch, where I have the same code
as in main branch, but with more elaborate vignettes used to build a
pkgdown
A package cannot be that large directly. Please see information on creating an
ExperimentHub package to provide the data for use in the package:
https://bioconductor.org/packages/release/bioc/vignettes/HubPub/inst/doc/CreateAHubPackage.html
Cheers,
Lori Shepherd - Kern
Bioconductor Core
Hi Bioconductor,
I have made a database that is 27 GB that I would like to share as part of a
Bioconductor package and I was just wondering if it is possible to submit very
large files like this to Bioconductor or if there may be any alternative ways
of sharing the file as part of a package?
