On 21/03/2023 12:48, Pooja Gangras wrote:
> Hi Herve,
>
> Thank you for the quick response.
>
> So what surprises me is that msa was compiling and building just fine
> on the devel branch until now.
As I said, the switch from C++14 to C++17 happened not too long ago in
the devel version of R.
I am aware of the AnnotationHub package, but currently I think it is not
possible to integrate with minfi.
In the last several lines in
https://github.com/hansenlab/minfi/blob/master/R/IlluminaMethylationAnnotation-class.R
setMethod(
"getManifest",
signature(object =
Hi Herve,
Thank you for the quick response.
So what surprises me is that msa was compiling and building just fine on
the devel branch until now. And hence so was surfaltr, without any errors.
There was a warning in surfaltr which one can see on the 3.16 release, I
had fixed it in the devel
Hi Pooja,
Generally speaking there are 3 things you can do when a dep breaks your
package:
1. Consider getting rid of that dep.
2. Contact the author/maintainers of the dep to let them know about the
problem. If you can suggest a fix (e.g. by sending a PR on GitHub),
that's even better, as
This issue should now be resolved.
Thank you for your patience
Cheers,
Lori Shepherd - Kern
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From:
Thanks for the clarification. I have a analytics plot, which receives the
download stats from these pages and has not been updated for months. I thought
this is the cause, but could be something else. Anyway, thanks for working on
the problem.
Weijun
On Monday, March 20, 2023, 01:06:26
Thank you, Lori! I have successfully opened a new issue.
Best,
Ran
On Tue, Mar 21, 2023 at 8:36 AM Kern, Lori
wrote:
> I modified the code and if you try to resubmit again it should work this
> time.
>
> Lori Shepherd - Kern
>
> Bioconductor Core Team
>
> Roswell Park Comprehensive Cancer
Hi,
I got an email yesterday alerting me of the error in the build in the new
BioC release. Upon looking into the error further I found out that the
error is occurring because a dependency 'msa' package is not being built in
the new release likely due to some issues with the C++ compiler (just
I modified the code and if you try to resubmit again it should work this time.
Lori Shepherd - Kern
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
Hi Lori,
I submitted a new issue #2962. Since I cannot post to the same directory
twice, this issue was also closed. Could you please open it?
Thanks,
Ran
On Tue, Mar 21, 2023 at 04:31 Kern, Lori
wrote:
> With the recent updates to the branch renaming and given the large gap in
> time, Could
Hello Bioconductor Community!
The newest db0s, OrgDbs, and TxDbs annotation packages for the upcoming
Bioconductor 3.17 release are up and available for download in the devel version
of Bioconductor.
The deadline for submitting contributed annotations will be Wednesday April
12th.
The new db0
The maintainer for these two packages
IlluminaHumanMethylationEPICmanifest
IlluminaHumanMethylationEPICanno.ilm10b4.hg19
Is actually Kasper Daniel Hansen as listed in the DESCRIPTION file not bioc
core members.
You could reach out to Kasper to see if there is any intention or efforts that
With the recent updates to the branch renaming and given the large gap in time,
Could you please resubmit as a new issue.
Lori Shepherd - Kern
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New
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