Re: [Bioc-devel] BiocManager::install

2023-05-12 Thread Klaus Schliep
Hi all, no real contribution to this discussion, just some appreciation to all your hard work. I just wish CRAN had something like a proper release cycle for packages. I contribute to two packages phangorn and ape, which have a decent number of reverse dependencies. So you can't introduce any

[Bioc-devel] Empty DataFrame Causes SummarizedExperiment Constructor Error

2023-05-12 Thread Dario Strbenac via Bioc-devel
Good day, The default value of colData is DataFrame(). Not specifying an informative colData is fine. countsMini <- matrix(rpois(100, 100), ncol = 10) colnames(countsMini) <- paste("Cell", 1:10) rownames(countsMini) <- paste("Gene", 1:10) SummarizedExperiment(assays = list(counts = countsMini))

Re: [Bioc-devel] BiocManager::install

2023-05-12 Thread Wolfgang Huber
> Il giorno 12.05.2023, alle ore 04:43, Kasper Daniel Hansen > ha scritto: > > It seems totally sensible to be able to use BiocManager to install either > bioc-release or bioc-devel at any time, provided you're running R-devel. > First, by definition, R-devel is always >= the R used for