Re: [Bioc-devel] Missing CHM13v2.0 TxDB and OrgDb objects

2023-12-11 Thread Vincent Carey
Thanks Jim, I tend to agree with you. Christian, I had a look at ArchR but could not tell where the system contacts the Bioc annotation elements. Can you give some hints? I'd like to be able to verify compatibility. On Mon, Dec 11, 2023 at 9:19 AM James W. MacDonald wrote: > I don't believe a

Re: [Bioc-devel] Missing CHM13v2.0 TxDB and OrgDb objects

2023-12-11 Thread James W. MacDonald
I don't believe a different OrgDb is required. The OrgDb package is meant to provide annotations for genes such as gene symbol or GO term, etc, which are orthogonal to the sequence of the genome, so the current version should suffice. -Original Message- From: Bioc-devel On Behalf Of