Dear Hervé,
Thanks a lot for the explanation and clarification! Issue should be
fixed by now.
Kind regards,
Johannes
Am 2024-02-02 01:37, schrieb Hervé Pagès:
> Just to clarify: we build the vignettes on all platforms, via 'R CMD
> build'. However when a package contains more than one
Just to clarify: we build the vignettes on all platforms, via 'R CMD
build'. However when a package contains more than one vignette like
here, keep in mind that 'R CMD build' evaluates them all in the same R
session. This "feature" can help a vignette succeed even if it's broken.
For example
Hi,
Thanks a lot for the quick reply!
Vignette is already fixed and committed.
Kind regards,
Johannes
On 01.02.24 22:24, Martin Grigorov wrote:
Hi,
On Thu, 1 Feb 2024 at 23:05, Jennifer Wokaty
mailto:jennifer.wok...@sph.cuny.edu>> wrote:
Hi Johannes,
Looking at R CMD Check on
Hi,
On Thu, 1 Feb 2024 at 23:05, Jennifer Wokaty
wrote:
> Hi Johannes,
>
> Looking at R CMD Check on devel, it looks like you're missing a
> `library(ReactomeGSA)` in reanalysing-public-data.Rmd, which is why it
> doesn't find the function `get_public_species()`. We only build the
> vignettes
Hi Johannes,
Looking at R CMD Check on devel, it looks like you're missing a
`library(ReactomeGSA)` in reanalysing-public-data.Rmd, which is why it doesn't
find the function `get_public_species()`. We only build the vignettes on the
Linux builders, which this error is only caught there.
Hello,
I just received a second warning the our package ReactomeGSA is failing
in both release and devel on all platforms.
Quickly checking the respective reports shows that this is not the case:
https://bioconductor.org/checkResults/release/bioc-LATEST/ReactomeGSA/
