Re: [Bioc-devel] Is package name "ADAPT" available?

2024-04-09 Thread Mukai Wang
Thanks Hervé! -Mukai On Tue, Apr 9, 2024 at 5:34 PM Hervé Pagès wrote: > Also BiocManager::available() will show you all the packages in the > CRAN/Bioconductor ecosystem that contain the specified string: > > > library(BiocManager) > > available("ADAPT") > [1] "adapt4pv"

Re: [Bioc-devel] Is package name "ADAPT" available?

2024-04-09 Thread Hervé Pagès
Also BiocManager::available() will show you all the packages in the CRAN/Bioconductor ecosystem that contain the specified string: > library(BiocManager) > available("ADAPT")  [1] "adapt4pv"    "adaptalint" "adaptDiag"  [4] "AdaptGauss"  "adaptiveGPCA" "AdaptiveSparsity"  

Re: [Bioc-devel] Is package name "ADAPT" available?

2024-04-09 Thread Mukai Wang
Thank you Olly! -Mukai On Tue, Apr 9, 2024 at 10:31 AM Oliver Crook wrote: > Hi Mukai, > > If you run biocCheck on your package it will tell you if the name is > already taken. > > Best wishes, > Olly > > --- > Dr. Oliver Crook (he/him) > Florence Nightingale Bicentennial Fellow, Department of

Re: [Bioc-devel] Is package name "ADAPT" available?

2024-04-09 Thread Oliver Crook via Bioc-devel
Hi Mukai, If you run biocCheck on your package it will tell you if the name is already taken. Best wishes, Olly --- Dr. Oliver Crook (he/him) Florence Nightingale Bicentennial Fellow, Department of Statistics Todd-Bird Junior Research Fellow, New College University of Oxford

[Bioc-devel] Is package name "ADAPT" available?

2024-04-09 Thread Mukai Wang
Dear bioconductor community, I am writing to ask if the package name ADAPT is available for use. I don't see any package with this name on bioconductor but there is a package called "adapt" archived many years ago on CRAN, so I am not sure. Any suggestion is appreciated! Best, Mukai -- Mukai

Re: [Bioc-devel] List of Deprecated Packages for Bioc3.19

2024-04-09 Thread Kern, Lori via Bioc-devel
The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. This is the current list of deprecated packages for Bioc 3.19. It should be noted, we did try to reach out to these package