Re: [Bioc-devel] jupyter installation on merida1

Dear maintainers, Is there any progress with this? Any way I can help? Thank you, Philipp - Ursprüngliche Mail - Von: "Philipp Angerer" An: "bioc-devel" Gesendet: Mittwoch, 4. Dezember 2019 10:58:44 Betreff: [Bioc-devel] jupyter installation on merida1 Dear BioConductor maintainers,

[Bioc-devel] jupyter installation on merida1

Dear BioConductor maintainers, The buildbots almost seem able to build my package’s vignettes again, but the jupyter installation on merida1 still [ http://bioconductor.org/checkResults/release/bioc-LATEST/destiny/merida1-buildsrc.html | doesn’t seem quite right ] : * creating vignettes

Re: [Bioc-devel] New pre-receive hook on git.bioconductor.org

ust 2017 14:04:50 Betreff: Re: [Bioc-devel] New pre-receive hook on git.bioconductor.org Hi Philipp, Please try again. Best, Nitesh > On Aug 30, 2017, at 4:33 AM, Angerer, Philipp > <philipp.ange...@helmholtz-muenchen.de> wrote: > > hi, sadly my duplicate commits are a

Re: [Bioc-devel] New pre-receive hook on git.bioconductor.org

hi, sadly my duplicate commits are authored by Herve Pages and already in the repo , so i can’t work at all on my package (destiny). $ git push Zähle Objekte: 12, Fertig. Delta compression using up to 8 threads. Komprimiere Objekte: 100% (12/12), Fertig. Schreibe Objekte: 100% (12/12), 1.14

Re: [Bioc-devel] transitioning scater/scran to SingleCellExperiment

Hi Aaron and Martin, In any case, a distance matrix calculated from such an array would be fine, as long as the dimensions are equal to the number of cells. The question is whether it is needed by enough packages to warrant a slot in the base SCE class; I will discuss this with Davide and

Re: [Bioc-devel] transitioning scater/scran to SingleCellExperiment

Hi Aaron, I guess this would be a question for the SummarizedExperiment developers, though personally, I never liked ExpressionSet's inclination to slap names on everything. Too bad we’re bound to SummarizedExperiment’s “rows” and “cols”. Since they always refer to features and

Re: [Bioc-devel] transitioning scater/scran to SingleCellExperiment

Hi! As I told you at the HCA hackathon, I’m interested in switching over destiny! I think the class is a really cool idea and seems very well thought out. Interestingly the design decisions coverged very well with [ https://github.com/theislab/scanpy#readme | scanpy ] ’s [

Re: [Bioc-devel] Git Transition Plan

hi, do you know by now when the beta will start? i’m honestly a bit tired of SVN and would like to participate Von: "Turaga, Nitesh" An: bioc-devel@r-project.org Gesendet: Donnerstag, 1. Juni 2017 14:19:59 Betreff: Re: [Bioc-devel] Git Transition Plan Hi

Re: [Bioc-devel] destiny git mirror and SVN desynced

lt;martin.mor...@roswellpark.org> An: "Angerer, Philipp" <philipp.ange...@helmholtz-muenchen.de>, "bioc-devel" <bioc-devel@r-project.org> Gesendet: Mittwoch, 14. Dezember 2016 16:02:04 Betreff: Re: [Bioc-devel] destiny git mirror and SVN desynced On 12/14/2016

[Bioc-devel] destiny git mirror and SVN desynced

hi, for my package “destiny”, the master and release-3.4 branches aren’t in sync between SVN and the gihub mirror. release-3.4 is just 2 commits behind, but the master branch has diverged. (a few commits have different hashs and a few are missing on the github mirror) this has been really

Re: [Bioc-devel] tokay1 (windows) build server cannot use the nbconvertR vignette engine

Although, since you (Philipp) are the maintainer of the nbconvertR package, you may want to create an INSTALL file in that package. It's up to you. Dan Haha, yeah. Thanks, Dan! I’m already in the process of submitting nbconvertR 1.1, which only uses jupyter (Using ipython nbconvert

[Bioc-devel] tokay1 (windows) build server cannot use the nbconvertR vignette engine

Hi, Looking at my package’s build report, the devel version isn’t built anymore on windows: http://bioconductor.org/checkResults/devel/bioc-LATEST/destiny/tokay1-buildsrc.html The release version is built just fine with moscato2:

Re: [Bioc-devel] Git mirror out of sync

hi, it happened again:https://github.com/Bioconductor-mirror/destinyout of sync… Von: "Angerer, Philipp via Bioc-devel" <bioc-devel@r-project.org> An: "Martin Morgan" <martin.mor...@roswellpark.org> CC: "bioc-devel" <bioc-devel@r-project.org>

Re: [Bioc-devel] Git mirror out of sync

great, thanks! Von: "Martin Morgan" <martin.mor...@roswellpark.org> An: "Angerer, Philipp" <philipp.ange...@helmholtz-muenchen.de>, "bioc-devel" <bioc-devel@r-project.org> Gesendet: Donnerstag, 11. August 2016 12:54:50 Betreff: Re: [Bioc-dev

[Bioc-devel] Git mirror out of sync

Hi, destiny ’s git mirror has been out of sync for quite some time. The currently latest SVN revision has bumped the version to 1.3.4 , but git master is still on 1.3.0 . Thanks for looking at it, Philipp Helmholtz Zentrum Muenchen Deutsches Forschungszentrum fuer Gesundheit und