Re: [Bioc-devel] ptime ERROR

2020-02-06 Thread Christopher John
t;.ptime", proc.time(), pos = "CheckExEnv") On Thu, 6 Feb 2020 at 16:07, Christopher John wrote: > Hi > > I was wondering will this error disappear by itself? Because I did not > change the package. > > Thanks, > > Chris

[Bioc-devel] ptime ERROR

2020-02-06 Thread Christopher John
Hi I was wondering will this error disappear by itself? Because I did not change the package. Thanks, Chris [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel

[Bioc-devel] Windows only vignette error - any ideas?

2019-12-03 Thread Christopher John
Hi Since this morning I am getting an error for the Windows build only of my M3C package, shown below. Could anyone help please? Thanks, Chris * checking for file 'M3C/DESCRIPTION' ... OK * preparing 'M3C': * checking DESCRIPTION meta-information ... OK * installing the package to build

[Bioc-devel] New error appeared on dev without updating the development version

2019-11-11 Thread Christopher John
Hi I haven't done an update in a while, but got the following error message like yesterday just on windows, any ideas? Seems vignette related. Thanks. Chris ##

Re: [Bioc-devel] Version number error

2019-09-05 Thread Christopher John
no special significance in the third position (your > package will be bumped to 1.8.0 in release / 1.9.0 in devel at the next > release regardless...) so one would usually only get to '999' if one were a > very 'commit'ed person... ;) > > Martin > > On 9/5/19, 2:02 AM, "Bioc-d

Re: [Bioc-devel] Version number error

2019-09-05 Thread Christopher John
t; Bioconductor Core Team > > > > Roswell Park Cancer Institute > > > > Department of Biostatistics & Bioinformatics > > > > Elm & Carlton Streets > > > > Buffalo, New York 14263 > > > > > > From:

[Bioc-devel] Version number error

2019-09-04 Thread Christopher John
Hi I tried to update M3C as follows, and I got an error. What is wrong with the new version number please? What should it be? Version: 1.7.999 --> Version: 1.7.9991 Thanks, Chris [[alternative HTML version deleted]] ___

[Bioc-devel] Fwd: Version number update problem

2019-09-04 Thread Christopher John
Hi I tried to update as follows, and I got an error. What is wrong with the new version number please? Version: 1.7.999 --> Version: 1.7.9991 Thanks, Chris [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list

Re: [Bioc-devel] Warning in 'CHECK' report for Windows machine after release version bump

2018-11-01 Thread Christopher John
Hi I also have a warning after the upgrade, just for the development version (I have not changed). I am not sure why this happened as I can't find the ape in the namespace and previously had no warning before upgrade. Thanks. * checking whether package ‘M3C’ can be installed ... WARNING Found

[Bioc-devel] Changing the title of a package

2018-06-29 Thread Christopher John
Dear Bioconductor I want to change the title of my package, not the name. Is this OK to do as the next version bump just by changing the description field? Best wishes, Chris [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org

[Bioc-devel] Strange error for windows build

2018-05-03 Thread Christopher John
Dear Bioconductor I am getting a new weird error from today I think with my M3C package: http://bioconductor.org/packages/3.7/bioc/html/M3C.html Error in namespaceExport(ns, exports) : undefined exports: %s!=%, %s!==%, %s+%, %s<%, %s<=%, %s==%, %s===%, %s>%, %s>=%, %stri!=%, %stri!==%,

[Bioc-devel] Updating bioconductor after computer transfer - problem

2017-12-14 Thread Christopher John
Hi I have recently copy and pasted my github directory from my old PC to a new PC. I can update the github still fine, but bioconductor I get an error: christopher@RA-MAP:~/M3C$ git remote -v originhttps://github.com/crj32/M3C (fetch) originhttps://github.com/crj32/M3C (push) upstream

[Bioc-devel] Version update question and an error?

2017-12-12 Thread Christopher John
Hi I have had a package quite recently accepted to the bioconductor. I have two questions: 1. My version is listed as 0.99.98 in my local description file, 1.1.0 in my bioconductor development web page, and 1.0.0 in the non development bioconductor web page. Do I bump to 1.1.1 in my next commit

[Bioc-devel] Vignette figures are wrong size

2017-09-22 Thread Christopher John
Dear Bioconductor I checked my vignette using the knit option to biocstyle on my PC and the figure sizes were all fine after some tweaking. However, in the online vignette they have come out crazy small sizes. Previously I was resizing them so they matched each other using the width command as

[Bioc-devel] Error following post acceptance instructions: permission denied

2017-08-29 Thread Christopher John
Hi I have had my package accepted to the bioconductor (M3C). I then followed the instructions in the email to add a ssh key to my account, then summited this to the bioconductor. I tested the key using the github instructions and it seemed to work fine. Next I ran: git remote add upstream