Re: [Bioc-devel] C library or C package API for regular expressions

2016-01-26 Thread Jiří Hon
Message - From: "Jiří Hon" <xhonj...@stud.fit.vutbr.cz> To: "bioc-devel" <bioc-devel@r-project.org> Sent: Saturday, January 23, 2016 1:56:52 AM Subject: [Bioc-devel] C library or C package API for regular expressions Dear package developers, I would like to

Re: [Bioc-devel] C library or C package API for regular expressions

2016-01-26 Thread Jiří Hon
Dne 25.1.2016 v 23:34 Hervé Pagès napsal(a): Hi Jiri, On 01/25/2016 09:40 AM, Jiří Hon wrote: Hi Martin Dne 25.1.2016 v 13:08 Morgan, Martin napsal(a): There is discussion at http://stackoverflow.com/questions/23556205/using-boost-regex-with-rcpp pointing to http://gallery.rcpp.org

Re: [Bioc-devel] C library or C package API for regular expressions

2016-01-25 Thread Jiří Hon
be natural to have package with C API to the most efficient regexp libraries. Martin From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Jiří Hon <xhonj...@stud.fit.vutbr.cz> Sent: Monday, January 25, 2016 4:33 AM To: Charles Determan Cc:

Re: [Bioc-devel] C library or C package API for regular expressions

2016-01-25 Thread Jiří Hon
gt; On Saturday, January 23, 2016, Jiří Hon <xhonj...@stud.fit.vutbr.cz> wrote: > >> Dear package developers, >> >> I would like to ask you for advice. Please, what is the most seamless >> way to use regular expressions in C/C++ code of R/Bioconductor package? >

[Bioc-devel] C library or C package API for regular expressions

2016-01-23 Thread Jiří Hon
Dear package developers, I would like to ask you for advice. Please, what is the most seamless way to use regular expressions in C/C++ code of R/Bioconductor package? Is it allowed to bundle some C/C++ library for that (like PCRE or Boost.Regex)? Or is there existing C API of some package I can

Re: [Bioc-devel] Idea for improved visibility of Bioconductor packages

2015-10-29 Thread Jiří Hon
The implementation of Open Graph protocol should solve this, at least for LinkedIn and Facebook. See https://developer.linkedin.com/docs/share-on-linkedin (at the bottom of the page). Jiri Hon Dne 29.10.2015 v 14:59 Jim Hester napsal(a): It seems to be pulling it from an invisible

Re: [Bioc-devel] GLX extension missing on petty

2013-04-06 Thread Jiří Hon
Dne Fri, 05 Apr 2013 19:07:12 +0200 Dan Tenenbaum dtene...@fhcrc.org napsal(a): On Fri, Apr 5, 2013 at 2:11 AM, Jiří Hon xhonj...@stud.fit.vutbr.cz wrote: In the short term, you can disable all vignette code chunks that use rgl (with eval=FALSE), and do the same with examples that use rgl

[Bioc-devel] GLX extension missing on petty

2013-04-03 Thread Jiří Hon
Hi, the latest bioc build of my new package 'triplex' on petty ended with this error message: Warning in rgl.init(initValue) : RGL: GLX extension missing on server Warning in fun(libname, pkgname) : error in rgl_init For full report see

[Bioc-devel] Biostrings: XStringViews subsetting operator does not reduce element metadata

2013-02-21 Thread Jiří Hon
Hi, I found out, that XStringViews/Views subsetting operator does not reduce element metadata as I would expect. See the following example. It is reproducible in both stable (2.11) and development (2.12) versions of Bioconductor.