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From: bbs-nore...@bioconductor.org
Sent: 03 June 2022 18:00
To: Rodriguez Martinez, Andrea
S
Thanks very much.
Best wishes,
Andrea
From: Shepherd, Lori <lori.sheph...@roswellpark.org>
Sent: 19 September 2017 12:17:12
To: Rodriguez Martinez, Andrea; bioc-devel@r-project.org
Subject: Re: VIGNETTES IN DEVEL
There were changes to BiocStyle in
Hello,
I think there is something weird with the html vignettes in the devel branch.
For some reason, they've less width and the some images appear misaligned,
compared to the release version.
See below for example:
Hi,
Thanks very much for your reply. Really useful,
Andrea
From: Vincent Carey <st...@channing.harvard.edu>
Sent: 24 May 2017 17:20:48
To: Rodriguez Martinez, Andrea
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] getAnnMap: org.Hs.eg.db p
Hello,
I wanted to use annotate to transform entrez IDs into symbols, inside my
package. Something like for example:
getSYMBOL("5966", data = 'org.Hs.eg')
So I put in both NAMESPACE and description the annotate package and the
org.Hs.eg.db package, but when I try to check my package and
Hello,
I also have an error with tokay2 in the release branch (not in devel) of my
package MetaboSignal. It's an error that I have seen before:
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called 'Biobase'
>From what I was told another
Thanks very much
Andrea
From: Obenchain, Valerie <valerie.obench...@roswellpark.org>
Sent: 07 March 2017 17:39:58
To: Rodriguez Martinez, Andrea; bioc-devel@r-project.org
Subject: Re: [Bioc-devel] build report with error
Hi Andrea,
Our emails just c
Hi,
I just noticed that my packages MetaboSignal and MWASTools have a build report
with error for Windows in the devel branch. I wonder if there is something I
can do about this. See the specific error messages below:
-For MetaboSignal it says:
##
### Running command:
###
### chmod a+r
Thanks very much!
Andrea
From: Wong, Chao-Jen <cw...@fredhutch.org>
Sent: 28 December 2016 18:22:10
To: Rodriguez Martinez, Andrea
Cc: bioc-devel
Subject: Re: [Bioc-devel] Add journal citation to a package
Hi, Andrea,
This page might be helpful for you:
Hi,
I'd like to add the corresponding journal citation to my package. How can I do
that?
Thanks very much in advance,
Best wishes,
Andrea
[[alternative HTML version deleted]]
___
Bioc-devel@r-project.org mailing list
Thanks very much!
From: Nitesh <nitesh.tur...@gmail.com>
Sent: 30 November 2016 16:39:34
To: Rodriguez Martinez, Andrea; Kasper Daniel Hansen
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] problems installing cran dependencies with BioC devel
Thanks very much for the clarification.
Best wishes,
Andrea
From: Kasper Daniel Hansen <kasperdanielhan...@gmail.com>
Sent: 30 November 2016 16:26:10
To: Rodriguez Martinez, Andrea
Cc: Vincent Carey; bioc-devel@r-project.org
Subject: Re: [Bioc-devel] pr
...) :
installation of package �pbkrtest� had non-zero exit status
9: In install.packages(pkgs = doing, lib = lib, ...) :
installation of package �car� had non-zero exit status
Thanks very much,
Andrea
From: Kasper Daniel Hansen <kasperdanielhan...@gmail.com>
Sen
Hi,
I'm trying to install my MWASTools package (devel branch) in mac, and I get a
lot of errors regarding the installation of the dependencies from CRAN because
there are no files in the repository:
https://cran.rstudio.com/bin/macosx/mavericks/contrib/3.4/
For windows, I dont have any
Thanks very much. I will do that.
Best wishes,
Andrea
From: Martin Morgan <martin.mor...@roswellpark.org>
Sent: 24 October 2016 13:58:28
To: Rodriguez Martinez, Andrea; bioc-devel@r-project.org
Subject: Re: [Bioc-devel] SummarizedExperiment
On 10/24/2016
Hi,
I was just trying to use the devel branch, but I get this error message (using
R.3.3.1)
>BiocInstaller::useDevel()
>Error: 'devel' version requires a more recent R
Any help with this?
Thanks very much in advance,
Andrea
[[alternative HTML version deleted]]
tober 2016 00:22:14
To: Rodriguez Martinez, Andrea
Cc: bioc-devel
Subject: Re: [Bioc-devel] unable to install/download IRanges, Biobase,
GenomeInfoDb
Have you tried to install those packages? Note that errors (or warnings) in the
build report does NOT mean that you cannot install the packages.
Installin
Hi,
I am a bit worried to see that I'm unable to install 3 central packages of
Bioconductor: IRanges, Biobase, GenomeInfoDb. IRanges has warnings in the
build/check report, but the other two seem fine.
Some dependencies of my package (MetaboSignal) depend on these 3 packages,
which means
Thanks very much! It's nice to see that you've added gene symbols to the new
hpaNormalTissue dataset.
Best wishes,
Andrea
From: Laurent Gatto <lg...@cam.ac.uk>
Sent: 29 September 2016 16:01:57
To: Rodriguez Martinez, Andrea
Cc: bioc-devel@r-project.org
S
Ok! Thanks very much!
Andrea
From: Shepherd, Lori <lori.sheph...@roswellpark.org>
Sent: 29 September 2016 15:53:15
To: Rodriguez Martinez, Andrea; bioc-devel@r-project.org
Subject: Re: Change in the function getHPa( ) of the hpar package
Hi,
Ple
Hi,
I've just noticed that the function getHPa package has recently changed in the
devel branch of the package, as follows:
# Old function (in the current release branch)
getHpa(id, hpadata = "NormalTissue")
#New function (in the current devel branch)
getHpa(id, hpadata =
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