Re: [Bioc-devel] Bioc2020 - Deadline for workshops/talk/poster TOMORROW

2020-03-02 Thread Simina Boca
2020 at 2:58 PM Simina Boca wrote: > >> Is the deadline 11:59 pm tomorrow or another time? >> >> Thanks! >> Cheers, >> Simina >> >> On Mon, Mar 2, 2020, 8:08 AM Shepherd, Lori < >> lori.sheph...@roswellpark.org> >> wrote: >> >

Re: [Bioc-devel] Bioc2020 - Deadline for workshops/talk/poster TOMORROW

2020-03-02 Thread Simina Boca
Is the deadline 11:59 pm tomorrow or another time? Thanks! Cheers, Simina On Mon, Mar 2, 2020, 8:08 AM Shepherd, Lori wrote: > Reminder: TOMORROW March 3rd is the last day to submit proposals for > Bioc2020 workshops/talks/posters! > http://bioc2020.bioconductor.org/call-for-abstracts > > >

Re: [Bioc-devel] Error in Vignette of package

2019-12-10 Thread Simina Boca
ej, > Sergi > ​​ > > On Monday, December 09, 2019 11:37 CET, Andrzej Oleś < > andrzej.o...@gmail.com> wrote: > > > Hi Simina, > > thank you for reporting the remaining problem on Windows builders. I have > just made an adjustment to BiocStyle which should resolv

Re: [Bioc-devel] Error in Vignette of package

2019-12-08 Thread Simina Boca
Hi all, I've been following this conversation as I was having the same issue for the swfdr package. Happy to see that it's now fixed on malbec and merida, though I now see a different error on tokay, also referring to the vignettes. I looked around a bit, and a bunch of other packages now have the

Re: [Bioc-devel] pushing changes to an existing package

2019-05-06 Thread Simina Boca
Thank you again Nitesh! I'm now having some issues with pushing the origin master: C:\Users\smb310\Documents\GitHub\MultiMed [master ↑]> git push upstream master Warning: Permanently added 'git.bioconductor.org,34.192.48.227' (ECDSA) to the list of known hosts. Counting objects: 16, done.

Re: [Bioc-devel] pushing changes to an existing package

2019-05-02 Thread Simina Boca
Thank you, it seems to work now! Do you have any idea of why the ".git" had been moved to ".g?" Just curious if it was something on my end. Cheers, Simina On Thu, May 2, 2019 at 2:15 PM Turaga, Nitesh wrote: > Once your access works you should see yourself as maintainer with Read and > Write

Re: [Bioc-devel] pushing changes to an existing package

2019-05-02 Thread Simina Boca
this issue once we are done with the > release. > > https://stat.ethz.ch/pipermail/bioc-devel/2019-May/015050.html > > Best, > > Nitesh > > On May 2, 2019, at 12:58 PM, Simina Boca wrote: > > Thank you Nitesh and sorry for missing this initially! > > This on

[Bioc-devel] pushing changes to an existing package

2019-04-30 Thread Simina Boca
Hello, I am trying to update my package MultiMed https://www.bioconductor.org/packages/release/bioc/html/MultiMed.html. It's on Github at https://github.com/SiminaB/MultiMed. I got and updated the SSH key (since I am using a new computer) but when I try to "git fetch --all" I still get a

Re: [Bioc-devel] updating Bioconductor package that is already on Github

2018-01-31 Thread Simina Boca
; On Jan 30, 2018, at 10:51 PM, Simina Boca <smb...@georgetown.edu> wrote: > > > > Sure! This is for the MultiMed package, not swfdr, so I made that change > below: > > > > ~\Documents\GitHub\MultiMed [master ≡]> git remote -v > > origin https://github

Re: [Bioc-devel] updating Bioconductor package that is already on Github

2018-01-30 Thread Simina Boca
bioconductor.org/ > developers/how-to/git/faq/ section point 16) > > > Nitesh > > > On Jan 30, 2018, at 8:47 PM, Simina Boca <smb...@georgetown.edu> wrote: > > > > Hi Nitesh, > > > > I submitted this key as wel

Re: [Bioc-devel] updating Bioconductor package that is already on Github

2018-01-30 Thread Simina Boca
the error message when trying to push upstream. Thanks so much for all your help! Best, Simina On Sun, Jan 28, 2018 at 9:53 AM, Simina Boca <smb...@georgetown.edu> wrote: > Thanks so much Nitesh! I had submitted my public key last time I did this > (a few months ago) so I thought I didn'

Re: [Bioc-devel] updating Bioconductor package that is already on Github

2018-01-28 Thread Simina Boca
“id_rsa”). > > If you have to configure your git login, please follow the link below to > make sure that the same key is used > > http://bioconductor.org/developers/how-to/git/faq/ > > Best, > > Nitesh > > > > On Jan 26, 2018, at 12:36 PM, Simina Boca <smb..

Re: [Bioc-devel] updating Bioconductor package that is already on Github

2018-01-26 Thread Simina Boca
hdodt16BymxkEWk380yODUQ== > > > You should use a private key corresponding to that public key. > > Best, > > Nitesh > > > On Jan 26, 2018, at 12:05 PM, Simina Boca <smb...@georgetown.edu> wrote: > > > > Dear all, > > Thank you to Sean, Lori, and Nitesh

Re: [Bioc-devel] updating Bioconductor package that is already on Github

2018-01-26 Thread Simina Boca
ransition, to associate > your key to the package. > > For new packages this issue doesn’t apply, because we just collect their > Github IDs. > > Hope this helps. > > Best, > > Nitesh > > > On Sep 11, 2017, at 2:50 PM, Simina Boca <smb...@georgetown.edu> wrote:

Re: [Bioc-devel] updating Bioconductor package that is already on Github

2017-09-11 Thread Simina Boca
led the reponame) fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. Thank you so much! Best, Simina On Wed, Sep 6, 2017 at 10:56 AM, Simina Boca <smb...@georgetown.edu> wrote: > Thank you so much Sean and Lori! For s

Re: [Bioc-devel] Upstream permission denied

2017-09-11 Thread Simina Boca
ail). > > Cheers, > Vlad > > On Mon, Sep 11, 2017 at 5:58 PM Simina Boca <smb...@georgetown.edu> wrote: > >> Hi Vladimir, >> This seems like the same error I was getting. Here is the helpful advice >> I got from Sean: >> >> Hi, Simina. &

Re: [Bioc-devel] Upstream permission denied

2017-09-11 Thread Simina Boca
Hi Vladimir, This seems like the same error I was getting. Here is the helpful advice I got from Sean: Hi, Simina. On Mon, Sep 11, 2017 at 12:55 PM, Vladimir Kiselev < vladimir.yu.kise...@gmail.com> wrote: > Hello, > > I am trying to push a new version of my package to git.bioconductor.org. I >

Re: [Bioc-devel] updating Bioconductor package that is already on Github

2017-09-06 Thread Simina Boca
a-new-ssh-key-and-adding-it-to-the-ssh-agent/ > > > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Cancer Institute > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > ---

[Bioc-devel] updating Bioconductor package that is already on Github

2017-09-05 Thread Simina Boca
Dear all, I hope this isn't a duplicate of another question. Here goes: - I would like to update my swfdr package, which is already on Bioconductor. It is also on Github and my submission process was via opening an issue at https://github.com/Bioconductor/Contributions/issues/213 - At this