[Bioc-devel] Deprecation genphen

2021-10-21 Thread Simo Kitanovski
Dears, we would like to deprecate genphen as its functionality has been superseded by other R packages. Would it be possible to begin the deprecation process? Best, Simo ___ Bioc-devel@r-project.org mailing list

Re: [Bioc-devel] IgGeneUsage Bioconductor package

2020-10-20 Thread Simo Kitanovski
out as a > community, I encourage you to cc bioc-devel on your emails. > > We are all in the same boat :) > > Nitesh > >> On Oct 20, 2020, at 12:30 PM, Simo Kitanovski >> mailto:simo.kitanov...@uni-due.de>> wrote: >> >> Thank you! >> &g

Re: [Bioc-devel] rstan related build error on tokay2

2020-04-18 Thread Simo Kitanovski
tools4 (which > should support C++14)? > > Martin > > On 4/15/20, 5:32 PM, "Bioc-devel on behalf of Simo Kitanovski" > > wrote: > > Dear all, > > I have noticed that 3 packages that depend on rstan (genphen, > IgGeneUsage and ban

[Bioc-devel] rstan related build error on tokay2

2020-04-15 Thread Simo Kitanovski
Dear all, I have noticed that 3 packages that depend on rstan (genphen, IgGeneUsage and banocc) seem to have build errors only on tokay2. The error messages are the same: /Compiling model ... Error: C++14 standard requested but CXX14 is not defined Execution halted/ This error and the

Re: [Bioc-devel] tokay1 C++14 compiler

2019-07-31 Thread Simo Kitanovski
he version of a compiler that is not available. The change will take a couple of days before it's reflected on the report. Cheers, H. On 7/29/19 12:54, Simo Kitanovski wrote: Surprisingly, if I design the package such that the stan models are compiled only at run-time I get no issues -> all servers buil

Re: [Bioc-devel] tokay1 C++14 compiler

2019-07-29 Thread Simo Kitanovski
run time and not just > at build time. > > On Thu, Jul 25, 2019 at 4:02 PM Simo Kitanovski > mailto:simo.kitanov...@uni-due.de>> wrote: > > Thanks! > > I will try to revise the code to avoid CXX14 if this is that case. > > Best > > > On 25.07

Re: [Bioc-devel] tokay1 C++14 compiler

2019-07-25 Thread Simo Kitanovski
without having a compliant compiler? On Thu, Jul 25, 2019 at 12:05 PM Simo Kitanovski wrote: > Hello Bioconductor community, > > I maintain the Bioconductor package genphen which depends on rstan for > MCMC sampling. To build the pac

[Bioc-devel] tokay1 C++14 compiler

2019-07-25 Thread Simo Kitanovski
Hello Bioconductor community, I maintain the Bioconductor package genphen which depends on rstan for MCMC sampling. To build the package one needs a C++14 compiler. I have no problem building the package on malbec1 and merida1, but not on tokay1. Any idea of what might have gone wrong on