Re: [Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access)
Yes. I see the changes pushed this morning. They should be reflected on tomorrow's build report. Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Enio Gjerga Sent: Monday, March 30, 2020 9:13 AM To: Turaga, Nitesh Cc: Shepherd, Lori ; Hervé Pagès Subject: Re: [Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access) Hello, Yes thank you. I am very new on git and will definitively have a look. However I think that I might have correctly pushed my changes to the CNORfeeder and the CNORode packages. Can someone please confirm if that the case? If not, I will carefully read the links before for the next time. Best, On Mon, 30 Mar 2020 at 14:46, Turaga, Nitesh mailto:nitesh.tur...@roswellpark.org>> wrote: Hi Enio, Based on the conversation you, Lori and I had, it seems that you are having a hard time with git as a version control system in general and not the Bioconductor git repository in general. Please consider going through some good learning material so you can get started with git. There are many resources where you can learn about git and GitHub. • git-and-github-learning-resources, https://help.github.com/articles/git-and-github-learning-resources/ • git-scm, https://git-scm.com/ • Guides, https://guides.github.com/ Best, Nitesh > On Mar 30, 2020, at 8:34 AM, Enio Gjerga > mailto:enio.gje...@gmail.com>> wrote: > > Hi, > > Ok thank you. I do the commit as following: 'git commit -a #update > CNORfeeder' and then I get the following: > > # Please enter the commit message for your changes. Lines starting > # with '#' will be ignored, and an empty message aborts the commit. > # > # On branch master > # Your branch is up to date with 'origin/master'. > # > # Changes to be committed: > # modified: DESCRIPTION > # modified: NAMESPACE > # modified: vignettes/CNORfeeder-vignette.Rnw > # > # Untracked files: > # R/buildFeederObjectDynamic.R > # R/computeMSE.R > # R/getLBodeContObjFunctionWeighted.R > # R/identifyMisfitIndices.R > # R/integrateLinks.R > # R/parEstimationLBodeSSmWeighted.R > # R/parEstimationLBodeWeighted.R > # R/preprocessingWeighted.R > # R/runDynamicFeeder.R > # data/CNOlistToy_Gene.RData > "~/CNORfeeder/.git/COMMIT_EDITMSG" 43L, 1176C > > However from this point the terminal becomes un-responsive and cannot type > anything. Then I quit this dialog through :wq after which I get the following > error: > > hint: Waiting for your editor to close the file... error: There was a problem > with the editor 'vi'. > Please supply the message using either -m or -F option. > > Please, how can I fix this issue? > > Cheers, > > On Mon, 30 Mar 2020 at 13:56, Shepherd, Lori > mailto:lori.sheph...@roswellpark.org>> wrote: > I do not see any changes in the > git.bioconductor.org<http://git.bioconductor.org> server on the master branch. > > Did you remember to do the following to commit your changes before you tried > pushing? > > git commit -a > > > In general a good basic workflow for working on the devel (master) branch is > > git fetch --all > git pull > git pull upstream origin > # make your changes including a version bump > git commit -a # commit your changes and give an informative message > git push > git push upstream master > > > Lori Shepherd > Bioconductor Core Team > Roswell Park Comprehensive Cancer Center > Department of Biostatistics & Bioinformatics > Elm & Carlton Streets > Buffalo, New York 14263 > From: Bioc-devel > mailto:bioc-devel-boun...@r-project.org>> > on behalf of Enio Gjerga mailto:enio.gje...@gmail.com>> > Sent: Monday, March 30, 2020 6:05 AM > To: Turaga, Nitesh > Cc: Hervé Pagès mailto:bioc-devel@r-project.org>> > Subject: Re: [Bioc-devel] Trying to access the source repository of a > bioconductor package (Developer Access) > > Hi, > > Thank you very much. After following your suggestion I went to set up the > SSH and I was also able to clone the packages I was maintaining locally. > Next I did my desired changes to the cloned package locally and I wanted to > push these changes to the Bioconductor repositories. For that I used the > following commands: > > 1. git checkout master from where I got a list of files in the package > labeled as M/D and the message: Already on 'master'. Your branch is up to > date with 'origin/master'. > > 2. git push upstream master from where I got the me
Re: [Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access)
Hello, Yes thank you. I am very new on git and will definitively have a look. However I think that I might have correctly pushed my changes to the CNORfeeder and the CNORode packages. Can someone please confirm if that the case? If not, I will carefully read the links before for the next time. Best, On Mon, 30 Mar 2020 at 14:46, Turaga, Nitesh wrote: > Hi Enio, > > Based on the conversation you, Lori and I had, it seems that you are > having a hard time with git as a version control system in general and not > the Bioconductor git repository in general. > > Please consider going through some good learning material so you can get > started with git. > > There are many resources where you can learn about git and GitHub. > • git-and-github-learning-resources, > https://help.github.com/articles/git-and-github-learning-resources/ > • git-scm, https://git-scm.com/ > • Guides, https://guides.github.com/ > > > Best, > > Nitesh > > > On Mar 30, 2020, at 8:34 AM, Enio Gjerga wrote: > > > > Hi, > > > > Ok thank you. I do the commit as following: 'git commit -a #update > CNORfeeder' and then I get the following: > > > > # Please enter the commit message for your changes. Lines starting > > # with '#' will be ignored, and an empty message aborts the commit. > > # > > # On branch master > > # Your branch is up to date with 'origin/master'. > > # > > # Changes to be committed: > > # modified: DESCRIPTION > > # modified: NAMESPACE > > # modified: vignettes/CNORfeeder-vignette.Rnw > > # > > # Untracked files: > > # R/buildFeederObjectDynamic.R > > # R/computeMSE.R > > # R/getLBodeContObjFunctionWeighted.R > > # R/identifyMisfitIndices.R > > # R/integrateLinks.R > > # R/parEstimationLBodeSSmWeighted.R > > # R/parEstimationLBodeWeighted.R > > # R/preprocessingWeighted.R > > # R/runDynamicFeeder.R > > # data/CNOlistToy_Gene.RData > > "~/CNORfeeder/.git/COMMIT_EDITMSG" 43L, 1176C > > > > However from this point the terminal becomes un-responsive and cannot > type anything. Then I quit this dialog through :wq after which I get the > following error: > > > > hint: Waiting for your editor to close the file... error: There was a > problem with the editor 'vi'. > > Please supply the message using either -m or -F option. > > > > Please, how can I fix this issue? > > > > Cheers, > > > > On Mon, 30 Mar 2020 at 13:56, Shepherd, Lori < > lori.sheph...@roswellpark.org> wrote: > > I do not see any changes in the git.bioconductor.org server on the > master branch. > > > > Did you remember to do the following to commit your changes before you > tried pushing? > > > > git commit -a > > > > > > In general a good basic workflow for working on the devel (master) > branch is > > > > git fetch --all > > git pull > > git pull upstream origin > > # make your changes including a version bump > > git commit -a # commit your changes and give an informative message > > git push > > git push upstream master > > > > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > > From: Bioc-devel on behalf of Enio > Gjerga > > Sent: Monday, March 30, 2020 6:05 AM > > To: Turaga, Nitesh > > Cc: Hervé Pagès > > Subject: Re: [Bioc-devel] Trying to access the source repository of a > bioconductor package (Developer Access) > > > > Hi, > > > > Thank you very much. After following your suggestion I went to set up the > > SSH and I was also able to clone the packages I was maintaining locally. > > Next I did my desired changes to the cloned package locally and I wanted > to > > push these changes to the Bioconductor repositories. For that I used the > > following commands: > > > > 1. git checkout master from where I got a list of files in the package > > labeled as M/D and the message: Already on 'master'. Your branch is up to > > date with 'origin/master'. > > > > 2. git push upstream master from where I got the message: Everything > > up-to-date. > > > > Does this mean that my changes are pushed to Bioconductor repositories > > correctly? > > > > Thank you again for all the help:)) > > > > Cheers, > > Enio > > > > On Fri, 27 Mar 2020
Re: [Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access)
Hi Enio, Based on the conversation you, Lori and I had, it seems that you are having a hard time with git as a version control system in general and not the Bioconductor git repository in general. Please consider going through some good learning material so you can get started with git. There are many resources where you can learn about git and GitHub. • git-and-github-learning-resources, https://help.github.com/articles/git-and-github-learning-resources/ • git-scm, https://git-scm.com/ • Guides, https://guides.github.com/ Best, Nitesh > On Mar 30, 2020, at 8:34 AM, Enio Gjerga wrote: > > Hi, > > Ok thank you. I do the commit as following: 'git commit -a #update > CNORfeeder' and then I get the following: > > # Please enter the commit message for your changes. Lines starting > # with '#' will be ignored, and an empty message aborts the commit. > # > # On branch master > # Your branch is up to date with 'origin/master'. > # > # Changes to be committed: > # modified: DESCRIPTION > # modified: NAMESPACE > # modified: vignettes/CNORfeeder-vignette.Rnw > # > # Untracked files: > # R/buildFeederObjectDynamic.R > # R/computeMSE.R > # R/getLBodeContObjFunctionWeighted.R > # R/identifyMisfitIndices.R > # R/integrateLinks.R > # R/parEstimationLBodeSSmWeighted.R > # R/parEstimationLBodeWeighted.R > # R/preprocessingWeighted.R > # R/runDynamicFeeder.R > # data/CNOlistToy_Gene.RData > "~/CNORfeeder/.git/COMMIT_EDITMSG" 43L, 1176C > > However from this point the terminal becomes un-responsive and cannot type > anything. Then I quit this dialog through :wq after which I get the following > error: > > hint: Waiting for your editor to close the file... error: There was a problem > with the editor 'vi'. > Please supply the message using either -m or -F option. > > Please, how can I fix this issue? > > Cheers, > > On Mon, 30 Mar 2020 at 13:56, Shepherd, Lori > wrote: > I do not see any changes in the git.bioconductor.org server on the master > branch. > > Did you remember to do the following to commit your changes before you tried > pushing? > > git commit -a > > > In general a good basic workflow for working on the devel (master) branch is > > git fetch --all > git pull > git pull upstream origin > # make your changes including a version bump > git commit -a # commit your changes and give an informative message > git push > git push upstream master > > > Lori Shepherd > Bioconductor Core Team > Roswell Park Comprehensive Cancer Center > Department of Biostatistics & Bioinformatics > Elm & Carlton Streets > Buffalo, New York 14263 > From: Bioc-devel on behalf of Enio Gjerga > > Sent: Monday, March 30, 2020 6:05 AM > To: Turaga, Nitesh > Cc: Hervé Pagès > Subject: Re: [Bioc-devel] Trying to access the source repository of a > bioconductor package (Developer Access) > > Hi, > > Thank you very much. After following your suggestion I went to set up the > SSH and I was also able to clone the packages I was maintaining locally. > Next I did my desired changes to the cloned package locally and I wanted to > push these changes to the Bioconductor repositories. For that I used the > following commands: > > 1. git checkout master from where I got a list of files in the package > labeled as M/D and the message: Already on 'master'. Your branch is up to > date with 'origin/master'. > > 2. git push upstream master from where I got the message: Everything > up-to-date. > > Does this mean that my changes are pushed to Bioconductor repositories > correctly? > > Thank you again for all the help:)) > > Cheers, > Enio > > On Fri, 27 Mar 2020 at 17:43, Turaga, Nitesh > wrote: > > > You should try and set up your system using SSH from your Github account > > as well. > > > > > On Mar 27, 2020, at 12:25 PM, Enio Gjerga wrote: > > > > > > Hi, > > > > > > Ahh apparently I cannot. I tried to clone a random repo (PHONEMeS) > > locally through the command you provided, and then got the following: > > > > > > Cloning into 'PHONEMeS'... > > > Permission denied (publickey). > > > fatal: Could not read from remote repository. > > > > > > Please make sure you have the correct access rights > > > and the repository exists. > > > > > > I usually rely on the Github Desktop which uses the HTTPS option. Might > > there be something wrong with my GitHub settings? > > > >
Re: [Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access)
That is asking you to make a commit message to summarize the changes. It is traceable when you use git log. You should type a commit message summarizing what you want to say Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Enio Gjerga Sent: Monday, March 30, 2020 8:34 AM To: Shepherd, Lori Cc: Turaga, Nitesh ; Hervé Pagès Subject: Re: [Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access) Hi, Ok thank you. I do the commit as following: 'git commit -a #update CNORfeeder' and then I get the following: # Please enter the commit message for your changes. Lines starting # with '#' will be ignored, and an empty message aborts the commit. # # On branch master # Your branch is up to date with 'origin/master'. # # Changes to be committed: # modified: DESCRIPTION # modified: NAMESPACE # modified: vignettes/CNORfeeder-vignette.Rnw # # Untracked files: # R/buildFeederObjectDynamic.R # R/computeMSE.R # R/getLBodeContObjFunctionWeighted.R # R/identifyMisfitIndices.R # R/integrateLinks.R # R/parEstimationLBodeSSmWeighted.R # R/parEstimationLBodeWeighted.R # R/preprocessingWeighted.R # R/runDynamicFeeder.R # data/CNOlistToy_Gene.RData "~/CNORfeeder/.git/COMMIT_EDITMSG" 43L, 1176C However from this point the terminal becomes un-responsive and cannot type anything. Then I quit this dialog through :wq after which I get the following error: hint: Waiting for your editor to close the file... error: There was a problem with the editor 'vi'. Please supply the message using either -m or -F option. Please, how can I fix this issue? Cheers, On Mon, 30 Mar 2020 at 13:56, Shepherd, Lori mailto:lori.sheph...@roswellpark.org>> wrote: I do not see any changes in the git.bioconductor.org<http://git.bioconductor.org> server on the master branch. Did you remember to do the following to commit your changes before you tried pushing? git commit -a In general a good basic workflow for working on the devel (master) branch is git fetch --all git pull git pull upstream origin # make your changes including a version bump git commit -a # commit your changes and give an informative message git push git push upstream master Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel mailto:bioc-devel-boun...@r-project.org>> on behalf of Enio Gjerga mailto:enio.gje...@gmail.com>> Sent: Monday, March 30, 2020 6:05 AM To: Turaga, Nitesh Cc: Hervé Pagès mailto:bioc-devel@r-project.org>> Subject: Re: [Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access) Hi, Thank you very much. After following your suggestion I went to set up the SSH and I was also able to clone the packages I was maintaining locally. Next I did my desired changes to the cloned package locally and I wanted to push these changes to the Bioconductor repositories. For that I used the following commands: 1. git checkout master from where I got a list of files in the package labeled as M/D and the message: Already on 'master'. Your branch is up to date with 'origin/master'. 2. git push upstream master from where I got the message: Everything up-to-date. Does this mean that my changes are pushed to Bioconductor repositories correctly? Thank you again for all the help:)) Cheers, Enio On Fri, 27 Mar 2020 at 17:43, Turaga, Nitesh mailto:nitesh.tur...@roswellpark.org>> wrote: > You should try and set up your system using SSH from your Github account > as well. > > > On Mar 27, 2020, at 12:25 PM, Enio Gjerga > > mailto:enio.gje...@gmail.com>> wrote: > > > > Hi, > > > > Ahh apparently I cannot. I tried to clone a random repo (PHONEMeS) > locally through the command you provided, and then got the following: > > > > Cloning into 'PHONEMeS'... > > Permission denied (publickey). > > fatal: Could not read from remote repository. > > > > Please make sure you have the correct access rights > > and the repository exists. > > > > I usually rely on the Github Desktop which uses the HTTPS option. Might > there be something wrong with my GitHub settings? > > > > Cheers, > > > > On Fri, 27 Mar 2020 at 17:18, Turaga, Nitesh < > nitesh.tur...@roswellpark.org<mailto:nitesh.tur...@roswellpark.org>> wrote: > > Can you access any git repository via the SSH protocol? > > > > Not via HTTPS. > > > > So yo
Re: [Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access)
Hi, Ok thank you. I do the commit as following: 'git commit -a #update CNORfeeder' and then I get the following: # Please enter the commit message for your changes. Lines starting # with '#' will be ignored, and an empty message aborts the commit. # # On branch master # Your branch is up to date with 'origin/master'. # # Changes to be committed: # modified: DESCRIPTION # modified: NAMESPACE # modified: vignettes/CNORfeeder-vignette.Rnw # # Untracked files: # R/buildFeederObjectDynamic.R # R/computeMSE.R # R/getLBodeContObjFunctionWeighted.R # R/identifyMisfitIndices.R # R/integrateLinks.R # R/parEstimationLBodeSSmWeighted.R # R/parEstimationLBodeWeighted.R # R/preprocessingWeighted.R # R/runDynamicFeeder.R # data/CNOlistToy_Gene.RData "~/CNORfeeder/.git/COMMIT_EDITMSG" 43L, 1176C However from this point the terminal becomes un-responsive and cannot type anything. Then I quit this dialog through :wq after which I get the following error: hint: Waiting for your editor to close the file... error: There was a problem with the editor 'vi'. Please supply the message using either -m or -F option. Please, how can I fix this issue? Cheers, On Mon, 30 Mar 2020 at 13:56, Shepherd, Lori wrote: > I do not see any changes in the git.bioconductor.org server on the master > branch. > > Did you remember to do the following to commit your changes before you > tried pushing? > > git commit -a > > > In general a good basic workflow for working on the devel (master) branch > is > > git fetch --all > git pull > git pull upstream origin > # make your changes including a version bump > git commit -a # commit your changes and give an informative message > git push > git push upstream master > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > -- > *From:* Bioc-devel on behalf of Enio > Gjerga > *Sent:* Monday, March 30, 2020 6:05 AM > *To:* Turaga, Nitesh > *Cc:* Hervé Pagès > *Subject:* Re: [Bioc-devel] Trying to access the source repository of a > bioconductor package (Developer Access) > > Hi, > > Thank you very much. After following your suggestion I went to set up the > SSH and I was also able to clone the packages I was maintaining locally. > Next I did my desired changes to the cloned package locally and I wanted to > push these changes to the Bioconductor repositories. For that I used the > following commands: > > 1. git checkout master from where I got a list of files in the package > labeled as M/D and the message: Already on 'master'. Your branch is up to > date with 'origin/master'. > > 2. git push upstream master from where I got the message: Everything > up-to-date. > > Does this mean that my changes are pushed to Bioconductor repositories > correctly? > > Thank you again for all the help:)) > > Cheers, > Enio > > On Fri, 27 Mar 2020 at 17:43, Turaga, Nitesh < > nitesh.tur...@roswellpark.org> > wrote: > > > You should try and set up your system using SSH from your Github account > > as well. > > > > > On Mar 27, 2020, at 12:25 PM, Enio Gjerga > wrote: > > > > > > Hi, > > > > > > Ahh apparently I cannot. I tried to clone a random repo (PHONEMeS) > > locally through the command you provided, and then got the following: > > > > > > Cloning into 'PHONEMeS'... > > > Permission denied (publickey). > > > fatal: Could not read from remote repository. > > > > > > Please make sure you have the correct access rights > > > and the repository exists. > > > > > > I usually rely on the Github Desktop which uses the HTTPS option. Might > > there be something wrong with my GitHub settings? > > > > > > Cheers, > > > > > > On Fri, 27 Mar 2020 at 17:18, Turaga, Nitesh < > > nitesh.tur...@roswellpark.org> wrote: > > > Can you access any git repository via the SSH protocol? > > > > > > Not via HTTPS. > > > > > > So you'll have to check if you can do something like, (from your own > > GitHub account). > > > > > > `git clone g...@github.com:/` > > > > > > > On Mar 27, 2020, at 12:15 PM, Enio Gjerga > > wrote: > > > > > > > > Hi, > > > > > > > > Sure, I got the following: ssh: Could not resolve hostname -: > nodename > > nor servname provided, or not known
Re: [Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access)
I do not see any changes in the git.bioconductor.org server on the master branch. Did you remember to do the following to commit your changes before you tried pushing? git commit -a In general a good basic workflow for working on the devel (master) branch is git fetch --all git pull git pull upstream origin # make your changes including a version bump git commit -a # commit your changes and give an informative message git push git push upstream master Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of Enio Gjerga Sent: Monday, March 30, 2020 6:05 AM To: Turaga, Nitesh Cc: Hervé Pagès Subject: Re: [Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access) Hi, Thank you very much. After following your suggestion I went to set up the SSH and I was also able to clone the packages I was maintaining locally. Next I did my desired changes to the cloned package locally and I wanted to push these changes to the Bioconductor repositories. For that I used the following commands: 1. git checkout master from where I got a list of files in the package labeled as M/D and the message: Already on 'master'. Your branch is up to date with 'origin/master'. 2. git push upstream master from where I got the message: Everything up-to-date. Does this mean that my changes are pushed to Bioconductor repositories correctly? Thank you again for all the help:)) Cheers, Enio On Fri, 27 Mar 2020 at 17:43, Turaga, Nitesh wrote: > You should try and set up your system using SSH from your Github account > as well. > > > On Mar 27, 2020, at 12:25 PM, Enio Gjerga wrote: > > > > Hi, > > > > Ahh apparently I cannot. I tried to clone a random repo (PHONEMeS) > locally through the command you provided, and then got the following: > > > > Cloning into 'PHONEMeS'... > > Permission denied (publickey). > > fatal: Could not read from remote repository. > > > > Please make sure you have the correct access rights > > and the repository exists. > > > > I usually rely on the Github Desktop which uses the HTTPS option. Might > there be something wrong with my GitHub settings? > > > > Cheers, > > > > On Fri, 27 Mar 2020 at 17:18, Turaga, Nitesh < > nitesh.tur...@roswellpark.org> wrote: > > Can you access any git repository via the SSH protocol? > > > > Not via HTTPS. > > > > So you'll have to check if you can do something like, (from your own > GitHub account). > > > > `git clone g...@github.com:/` > > > > > On Mar 27, 2020, at 12:15 PM, Enio Gjerga > wrote: > > > > > > Hi, > > > > > > Sure, I got the following: ssh: Could not resolve hostname -: nodename > nor servname provided, or not known > > > > > > Thank you, > > > > > > On Fri, 27 Mar 2020 at 17:13, Turaga, Nitesh < > nitesh.tur...@roswellpark.org> wrote: > > > Ok, can you also show my the result of > > > > > > ssh - T g...@git.bioconductor.org | grep CNORfeeder > > > > > > > On Mar 27, 2020, at 11:54 AM, Enio Gjerga > wrote: > > > > > > > > Hi, > > > > > > > > Thank you for your reply. So according to #14: > > > > > > > > 1. I use "git remote -v" and then I get the following: > > > > > > > > originhttps://github.com/saezlab/CNOv2.git (fetch) > > > > originhttps://github.com/saezlab/CNOv2.git (push) > > > > upstream g...@git.bioconductor.org:packages/CNORfeeder.git > (fetch) > > > > upstream g...@git.bioconductor.org:packages/CNORfeeder.git > (push) > > > > > > > > 2. Then I check if I have access to the git serve by using "ssh -T > g...@git.bioconductor.org" after which I get: > > > > > > > > Permission denied (publickey). > > > > > > > > 3. According to #15, I have generated another key under the name > id_rsa_bioc through the commands: > > > > > > > > mkdir -p ~/.ssh && chmod 700 ~/.ssh > > > > touch ~/.ssh/config > > > > chmod 600 ~/.ssh/config > > > > > > > > But it doesn't seem to generate anny ssh/config directory so was > wondering how can I add the: > > > > > > > > host git.bioconductor.org > > > > > > > > HostName > > > > git.bioconductor.org > > > > > > > >
Re: [Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access)
Hi, Thank you very much. After following your suggestion I went to set up the SSH and I was also able to clone the packages I was maintaining locally. Next I did my desired changes to the cloned package locally and I wanted to push these changes to the Bioconductor repositories. For that I used the following commands: 1. git checkout master from where I got a list of files in the package labeled as M/D and the message: Already on 'master'. Your branch is up to date with 'origin/master'. 2. git push upstream master from where I got the message: Everything up-to-date. Does this mean that my changes are pushed to Bioconductor repositories correctly? Thank you again for all the help:)) Cheers, Enio On Fri, 27 Mar 2020 at 17:43, Turaga, Nitesh wrote: > You should try and set up your system using SSH from your Github account > as well. > > > On Mar 27, 2020, at 12:25 PM, Enio Gjerga wrote: > > > > Hi, > > > > Ahh apparently I cannot. I tried to clone a random repo (PHONEMeS) > locally through the command you provided, and then got the following: > > > > Cloning into 'PHONEMeS'... > > Permission denied (publickey). > > fatal: Could not read from remote repository. > > > > Please make sure you have the correct access rights > > and the repository exists. > > > > I usually rely on the Github Desktop which uses the HTTPS option. Might > there be something wrong with my GitHub settings? > > > > Cheers, > > > > On Fri, 27 Mar 2020 at 17:18, Turaga, Nitesh < > nitesh.tur...@roswellpark.org> wrote: > > Can you access any git repository via the SSH protocol? > > > > Not via HTTPS. > > > > So you'll have to check if you can do something like, (from your own > GitHub account). > > > > `git clone g...@github.com:/` > > > > > On Mar 27, 2020, at 12:15 PM, Enio Gjerga > wrote: > > > > > > Hi, > > > > > > Sure, I got the following: ssh: Could not resolve hostname -: nodename > nor servname provided, or not known > > > > > > Thank you, > > > > > > On Fri, 27 Mar 2020 at 17:13, Turaga, Nitesh < > nitesh.tur...@roswellpark.org> wrote: > > > Ok, can you also show my the result of > > > > > > ssh - T g...@git.bioconductor.org | grep CNORfeeder > > > > > > > On Mar 27, 2020, at 11:54 AM, Enio Gjerga > wrote: > > > > > > > > Hi, > > > > > > > > Thank you for your reply. So according to #14: > > > > > > > > 1. I use "git remote -v" and then I get the following: > > > > > > > > originhttps://github.com/saezlab/CNOv2.git (fetch) > > > > originhttps://github.com/saezlab/CNOv2.git (push) > > > > upstream g...@git.bioconductor.org:packages/CNORfeeder.git > (fetch) > > > > upstream g...@git.bioconductor.org:packages/CNORfeeder.git > (push) > > > > > > > > 2. Then I check if I have access to the git serve by using "ssh -T > g...@git.bioconductor.org" after which I get: > > > > > > > > Permission denied (publickey). > > > > > > > > 3. According to #15, I have generated another key under the name > id_rsa_bioc through the commands: > > > > > > > > mkdir -p ~/.ssh && chmod 700 ~/.ssh > > > > touch ~/.ssh/config > > > > chmod 600 ~/.ssh/config > > > > > > > > But it doesn't seem to generate anny ssh/config directory so was > wondering how can I add the: > > > > > > > > host git.bioconductor.org > > > > > > > > HostName > > > > git.bioconductor.org > > > > > > > > IdentityFile ~/.ssh/id_rsa_bioconductor > > > > User git > > > > > > > > The public key of id_rsa_bioc is already added on my profile in > BiocCredentials and also on my GitHub account. > > > > > > > > As always any help is very much appreciated. > > > > > > > > Cheers, > > > > Enio > > > > > > > > On Fri, 27 Mar 2020 at 16:03, Turaga, Nitesh < > nitesh.tur...@roswellpark.org> wrote: > > > > As given in #14 of the FAQ, please send me > > > > > > > > git remote -v > > > > > > > > > > > > > > > > > > > > > On Mar 27, 2020, at 10:54 AM, Enio Gjerga > wrote: > > > > > > > > > > Hello, > > > > > > > > > > Thank you very much for your reply. I have added a new key on my > BiocCredentials and on Github, however, I am afraid that the same issue > still persists. If I try to check whether I have access to the package > (using the "ssh -T g...@git.bioconductor.org" command) or clone it locally > (through "git clone g...@git.bioconductor.org:packages/CNORfeeder" > command) I still unfortunately get the same "permission denied (public > key)" error. > > > > > > > > > > How can I check for my git set up? > > > > > > > > > > Sorry again, but quiet new on this. > > > > > > > > > > Cheers, > > > > > > > > > > On Fri, 27 Mar 2020 at 13:38, Turaga, Nitesh < > nitesh.tur...@roswellpark.org> wrote: > > > > > Try adding another key. If that doesn't work, show us your git set > up. > > > > > > > > > > http://bioconductor.org/developers/how-to/git/faq/ > > > > > > > > > > #13 and #14 > > > > > > > > > > Best, > > > > > > > > > > Nitesh > > > > > > > > > > > > > > > On 3/27/20, 6:15 AM, "Bioc-devel on behalf of Enio Gjerga" < >
Re: [Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access)
You should try and set up your system using SSH from your Github account as well. > On Mar 27, 2020, at 12:25 PM, Enio Gjerga wrote: > > Hi, > > Ahh apparently I cannot. I tried to clone a random repo (PHONEMeS) locally > through the command you provided, and then got the following: > > Cloning into 'PHONEMeS'... > Permission denied (publickey). > fatal: Could not read from remote repository. > > Please make sure you have the correct access rights > and the repository exists. > > I usually rely on the Github Desktop which uses the HTTPS option. Might there > be something wrong with my GitHub settings? > > Cheers, > > On Fri, 27 Mar 2020 at 17:18, Turaga, Nitesh > wrote: > Can you access any git repository via the SSH protocol? > > Not via HTTPS. > > So you'll have to check if you can do something like, (from your own GitHub > account). > > `git clone g...@github.com:/` > > > On Mar 27, 2020, at 12:15 PM, Enio Gjerga wrote: > > > > Hi, > > > > Sure, I got the following: ssh: Could not resolve hostname -: nodename nor > > servname provided, or not known > > > > Thank you, > > > > On Fri, 27 Mar 2020 at 17:13, Turaga, Nitesh > > wrote: > > Ok, can you also show my the result of > > > > ssh - T g...@git.bioconductor.org | grep CNORfeeder > > > > > On Mar 27, 2020, at 11:54 AM, Enio Gjerga wrote: > > > > > > Hi, > > > > > > Thank you for your reply. So according to #14: > > > > > > 1. I use "git remote -v" and then I get the following: > > > > > > originhttps://github.com/saezlab/CNOv2.git (fetch) > > > originhttps://github.com/saezlab/CNOv2.git (push) > > > upstream g...@git.bioconductor.org:packages/CNORfeeder.git (fetch) > > > upstream g...@git.bioconductor.org:packages/CNORfeeder.git (push) > > > > > > 2. Then I check if I have access to the git serve by using "ssh -T > > > g...@git.bioconductor.org" after which I get: > > > > > > Permission denied (publickey). > > > > > > 3. According to #15, I have generated another key under the name > > > id_rsa_bioc through the commands: > > > > > > mkdir -p ~/.ssh && chmod 700 ~/.ssh > > > touch ~/.ssh/config > > > chmod 600 ~/.ssh/config > > > > > > But it doesn't seem to generate anny ssh/config directory so was > > > wondering how can I add the: > > > > > > host git.bioconductor.org > > > > > > HostName > > > git.bioconductor.org > > > > > > IdentityFile ~/.ssh/id_rsa_bioconductor > > > User git > > > > > > The public key of id_rsa_bioc is already added on my profile in > > > BiocCredentials and also on my GitHub account. > > > > > > As always any help is very much appreciated. > > > > > > Cheers, > > > Enio > > > > > > On Fri, 27 Mar 2020 at 16:03, Turaga, Nitesh > > > wrote: > > > As given in #14 of the FAQ, please send me > > > > > > git remote -v > > > > > > > > > > > > > > > > On Mar 27, 2020, at 10:54 AM, Enio Gjerga wrote: > > > > > > > > Hello, > > > > > > > > Thank you very much for your reply. I have added a new key on my > > > > BiocCredentials and on Github, however, I am afraid that the same issue > > > > still persists. If I try to check whether I have access to the package > > > > (using the "ssh -T g...@git.bioconductor.org" command) or clone it > > > > locally (through "git clone > > > > g...@git.bioconductor.org:packages/CNORfeeder" command) I still > > > > unfortunately get the same "permission denied (public key)" error. > > > > > > > > How can I check for my git set up? > > > > > > > > Sorry again, but quiet new on this. > > > > > > > > Cheers, > > > > > > > > On Fri, 27 Mar 2020 at 13:38, Turaga, Nitesh > > > > wrote: > > > > Try adding another key. If that doesn't work, show us your git set up. > > > > > > > > http://bioconductor.org/developers/how-to/git/faq/ > > > > > > > > #13 and #14 > > > > > > > > Best, > > > > > > > > Nitesh > > > > > > > > > > > > On 3/27/20, 6:15 AM, "Bioc-devel on behalf of Enio Gjerga" > > > > > > > > wrote: > > > > > > > > Hello, > > > > > > > > I am Enio Gjerga and I am the maintainer of the CNORfeeder and the > > > > CNORode > > > > package, a role which I got recently. I am facing trouble trying to > > > > access > > > > the source packages for then later syncing it with a Github > > > > repository and > > > > do a few necessary updates. I try first to obtain developer access > > > > through > > > > the "git clone g...@git.bioconductor.org:packages/CNORfeeder" > > > > command, but > > > > then I get the error "Permission denied (publickey). fatal: Could > > > > not read > > > > from remote repository.". I already have the GitHub id and the > > > > ssh-rsa key > > > > on my user profile in https://git.bioconductor.org/BiocCredentials, > > > > but > > > > apparently I still can't get the access to the package and not sure > > > > what > > > > might be doing wrong. > > > > > > > > Any help about this would be
Re: [Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access)
Ok, can you also show my the result of ssh - T g...@git.bioconductor.org | grep CNORfeeder > On Mar 27, 2020, at 11:54 AM, Enio Gjerga wrote: > > Hi, > > Thank you for your reply. So according to #14: > > 1. I use "git remote -v" and then I get the following: > > originhttps://github.com/saezlab/CNOv2.git (fetch) > originhttps://github.com/saezlab/CNOv2.git (push) > upstream g...@git.bioconductor.org:packages/CNORfeeder.git (fetch) > upstream g...@git.bioconductor.org:packages/CNORfeeder.git (push) > > 2. Then I check if I have access to the git serve by using "ssh -T > g...@git.bioconductor.org" after which I get: > > Permission denied (publickey). > > 3. According to #15, I have generated another key under the name id_rsa_bioc > through the commands: > > mkdir -p ~/.ssh && chmod 700 ~/.ssh > touch ~/.ssh/config > chmod 600 ~/.ssh/config > > But it doesn't seem to generate anny ssh/config directory so was wondering > how can I add the: > > host git.bioconductor.org > > HostName > git.bioconductor.org > > IdentityFile ~/.ssh/id_rsa_bioconductor > User git > > The public key of id_rsa_bioc is already added on my profile in > BiocCredentials and also on my GitHub account. > > As always any help is very much appreciated. > > Cheers, > Enio > > On Fri, 27 Mar 2020 at 16:03, Turaga, Nitesh > wrote: > As given in #14 of the FAQ, please send me > > git remote -v > > > > > > On Mar 27, 2020, at 10:54 AM, Enio Gjerga wrote: > > > > Hello, > > > > Thank you very much for your reply. I have added a new key on my > > BiocCredentials and on Github, however, I am afraid that the same issue > > still persists. If I try to check whether I have access to the package > > (using the "ssh -T g...@git.bioconductor.org" command) or clone it locally > > (through "git clone g...@git.bioconductor.org:packages/CNORfeeder" command) > > I still unfortunately get the same "permission denied (public key)" error. > > > > How can I check for my git set up? > > > > Sorry again, but quiet new on this. > > > > Cheers, > > > > On Fri, 27 Mar 2020 at 13:38, Turaga, Nitesh > > wrote: > > Try adding another key. If that doesn't work, show us your git set up. > > > > http://bioconductor.org/developers/how-to/git/faq/ > > > > #13 and #14 > > > > Best, > > > > Nitesh > > > > > > On 3/27/20, 6:15 AM, "Bioc-devel on behalf of Enio Gjerga" > > wrote: > > > > Hello, > > > > I am Enio Gjerga and I am the maintainer of the CNORfeeder and the > > CNORode > > package, a role which I got recently. I am facing trouble trying to > > access > > the source packages for then later syncing it with a Github repository > > and > > do a few necessary updates. I try first to obtain developer access > > through > > the "git clone g...@git.bioconductor.org:packages/CNORfeeder" command, > > but > > then I get the error "Permission denied (publickey). fatal: Could not > > read > > from remote repository.". I already have the GitHub id and the ssh-rsa > > key > > on my user profile in https://git.bioconductor.org/BiocCredentials, but > > apparently I still can't get the access to the package and not sure what > > might be doing wrong. > > > > Any help about this would be much appreciated. > > > > Cheers, > > > > Enio > > > > -- > > Enio GJERGA > > PhD student > > JRC-COMBINE RWTH Aachen > > Tel : +4917685132057 > > > > [[alternative HTML version deleted]] > > > > ___ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > > > > > > > This email message may contain legally privileged and/or confidential > > information. If you are not the intended recipient(s), or the employee or > > agent responsible for the delivery of this message to the intended > > recipient(s), you are hereby notified that any disclosure, copying, > > distribution, or use of this email message is prohibited. If you have > > received this message in error, please notify the sender immediately by > > e-mail and delete this email message from your computer. Thank you. > > > > > > -- > > Enio GJERGA > > PhD student > > JRC-COMBINE RWTH Aachen > > Tel : +4917685132057 > > > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > > > -- > Enio GJERGA > PhD student > JRC-COMBINE RWTH Aachen > Tel : +4917685132057 >
Re: [Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access)
Hi, Thank you for your reply. So according to #14: 1. I use "git remote -v" and then I get the following: origin https://github.com/saezlab/CNOv2.git (fetch) origin https://github.com/saezlab/CNOv2.git (push) upstream g...@git.bioconductor.org:packages/CNORfeeder.git (fetch) upstream g...@git.bioconductor.org:packages/CNORfeeder.git (push) 2. Then I check if I have access to the git serve by using "ssh -T g...@git.bioconductor.org" after which I get: Permission denied (publickey). 3. According to #15, I have generated another key under the name id_rsa_bioc through the commands: mkdir -p ~/.ssh && chmod 700 ~/.ssh touch ~/.ssh/config chmod 600 ~/.ssh/config But it doesn't seem to generate anny ssh/config directory so was wondering how can I add the: host git.bioconductor.org HostName git.bioconductor.org IdentityFile ~/.ssh/id_rsa_bioconductor User git The public key of id_rsa_bioc is already added on my profile in BiocCredentials and also on my GitHub account. As always any help is very much appreciated. Cheers, Enio On Fri, 27 Mar 2020 at 16:03, Turaga, Nitesh wrote: > As given in #14 of the FAQ, please send me > > git remote -v > > > > > > On Mar 27, 2020, at 10:54 AM, Enio Gjerga wrote: > > > > Hello, > > > > Thank you very much for your reply. I have added a new key on my > BiocCredentials and on Github, however, I am afraid that the same issue > still persists. If I try to check whether I have access to the package > (using the "ssh -T g...@git.bioconductor.org" command) or clone it locally > (through "git clone g...@git.bioconductor.org:packages/CNORfeeder" > command) I still unfortunately get the same "permission denied (public > key)" error. > > > > How can I check for my git set up? > > > > Sorry again, but quiet new on this. > > > > Cheers, > > > > On Fri, 27 Mar 2020 at 13:38, Turaga, Nitesh < > nitesh.tur...@roswellpark.org> wrote: > > Try adding another key. If that doesn't work, show us your git set up. > > > > http://bioconductor.org/developers/how-to/git/faq/ > > > > #13 and #14 > > > > Best, > > > > Nitesh > > > > > > On 3/27/20, 6:15 AM, "Bioc-devel on behalf of Enio Gjerga" < > bioc-devel-boun...@r-project.org on behalf of enio.gje...@gmail.com> > wrote: > > > > Hello, > > > > I am Enio Gjerga and I am the maintainer of the CNORfeeder and the > CNORode > > package, a role which I got recently. I am facing trouble trying to > access > > the source packages for then later syncing it with a Github > repository and > > do a few necessary updates. I try first to obtain developer access > through > > the "git clone g...@git.bioconductor.org:packages/CNORfeeder" > command, but > > then I get the error "Permission denied (publickey). fatal: Could > not read > > from remote repository.". I already have the GitHub id and the > ssh-rsa key > > on my user profile in https://git.bioconductor.org/BiocCredentials, > but > > apparently I still can't get the access to the package and not sure > what > > might be doing wrong. > > > > Any help about this would be much appreciated. > > > > Cheers, > > > > Enio > > > > -- > > Enio GJERGA > > PhD student > > JRC-COMBINE RWTH Aachen > > Tel : +4917685132057 > > > > [[alternative HTML version deleted]] > > > > ___ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > > > > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > > > > > > -- > > Enio GJERGA > > PhD student > > JRC-COMBINE RWTH Aachen > > Tel : +4917685132057 > > > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. -- Enio GJERGA PhD student JRC-COMBINE RWTH Aachen Tel : +4917685132057 [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access)
As given in #14 of the FAQ, please send me git remote -v > On Mar 27, 2020, at 10:54 AM, Enio Gjerga wrote: > > Hello, > > Thank you very much for your reply. I have added a new key on my > BiocCredentials and on Github, however, I am afraid that the same issue still > persists. If I try to check whether I have access to the package (using the > "ssh -T g...@git.bioconductor.org" command) or clone it locally (through "git > clone g...@git.bioconductor.org:packages/CNORfeeder" command) I still > unfortunately get the same "permission denied (public key)" error. > > How can I check for my git set up? > > Sorry again, but quiet new on this. > > Cheers, > > On Fri, 27 Mar 2020 at 13:38, Turaga, Nitesh > wrote: > Try adding another key. If that doesn't work, show us your git set up. > > http://bioconductor.org/developers/how-to/git/faq/ > > #13 and #14 > > Best, > > Nitesh > > > On 3/27/20, 6:15 AM, "Bioc-devel on behalf of Enio Gjerga" > wrote: > > Hello, > > I am Enio Gjerga and I am the maintainer of the CNORfeeder and the CNORode > package, a role which I got recently. I am facing trouble trying to access > the source packages for then later syncing it with a Github repository and > do a few necessary updates. I try first to obtain developer access through > the "git clone g...@git.bioconductor.org:packages/CNORfeeder" command, but > then I get the error "Permission denied (publickey). fatal: Could not read > from remote repository.". I already have the GitHub id and the ssh-rsa key > on my user profile in https://git.bioconductor.org/BiocCredentials, but > apparently I still can't get the access to the package and not sure what > might be doing wrong. > > Any help about this would be much appreciated. > > Cheers, > > Enio > > -- > Enio GJERGA > PhD student > JRC-COMBINE RWTH Aachen > Tel : +4917685132057 > > [[alternative HTML version deleted]] > > ___ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > > > -- > Enio GJERGA > PhD student > JRC-COMBINE RWTH Aachen > Tel : +4917685132057 > This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access)
Hello, Thank you very much for your reply. I have added a new key on my BiocCredentials and on Github, however, I am afraid that the same issue still persists. If I try to check whether I have access to the package (using the "ssh -T g...@git.bioconductor.org" command) or clone it locally (through "git clone g...@git.bioconductor.org:packages/CNORfeeder" command) I still unfortunately get the same "permission denied (public key)" error. How can I check for my git set up? Sorry again, but quiet new on this. Cheers, On Fri, 27 Mar 2020 at 13:38, Turaga, Nitesh wrote: > Try adding another key. If that doesn't work, show us your git set up. > > http://bioconductor.org/developers/how-to/git/faq/ > > #13 and #14 > > Best, > > Nitesh > > > On 3/27/20, 6:15 AM, "Bioc-devel on behalf of Enio Gjerga" < > bioc-devel-boun...@r-project.org on behalf of enio.gje...@gmail.com> > wrote: > > Hello, > > I am Enio Gjerga and I am the maintainer of the CNORfeeder and the > CNORode > package, a role which I got recently. I am facing trouble trying to > access > the source packages for then later syncing it with a Github repository > and > do a few necessary updates. I try first to obtain developer access > through > the "git clone g...@git.bioconductor.org:packages/CNORfeeder" command, > but > then I get the error "Permission denied (publickey). fatal: Could not > read > from remote repository.". I already have the GitHub id and the ssh-rsa > key > on my user profile in https://git.bioconductor.org/BiocCredentials, > but > apparently I still can't get the access to the package and not sure > what > might be doing wrong. > > Any help about this would be much appreciated. > > Cheers, > > Enio > > -- > Enio GJERGA > PhD student > JRC-COMBINE RWTH Aachen > Tel : +4917685132057 > > [[alternative HTML version deleted]] > > ___ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. -- Enio GJERGA PhD student JRC-COMBINE RWTH Aachen Tel : +4917685132057 [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access)
Try adding another key. If that doesn't work, show us your git set up. http://bioconductor.org/developers/how-to/git/faq/ #13 and #14 Best, Nitesh On 3/27/20, 6:15 AM, "Bioc-devel on behalf of Enio Gjerga" wrote: Hello, I am Enio Gjerga and I am the maintainer of the CNORfeeder and the CNORode package, a role which I got recently. I am facing trouble trying to access the source packages for then later syncing it with a Github repository and do a few necessary updates. I try first to obtain developer access through the "git clone g...@git.bioconductor.org:packages/CNORfeeder" command, but then I get the error "Permission denied (publickey). fatal: Could not read from remote repository.". I already have the GitHub id and the ssh-rsa key on my user profile in https://git.bioconductor.org/BiocCredentials, but apparently I still can't get the access to the package and not sure what might be doing wrong. Any help about this would be much appreciated. Cheers, Enio -- Enio GJERGA PhD student JRC-COMBINE RWTH Aachen Tel : +4917685132057 [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access)
Hello, I am Enio Gjerga and I am the maintainer of the CNORfeeder and the CNORode package, a role which I got recently. I am facing trouble trying to access the source packages for then later syncing it with a Github repository and do a few necessary updates. I try first to obtain developer access through the "git clone g...@git.bioconductor.org:packages/CNORfeeder" command, but then I get the error "Permission denied (publickey). fatal: Could not read from remote repository.". I already have the GitHub id and the ssh-rsa key on my user profile in https://git.bioconductor.org/BiocCredentials, but apparently I still can't get the access to the package and not sure what might be doing wrong. Any help about this would be much appreciated. Cheers, Enio -- Enio GJERGA PhD student JRC-COMBINE RWTH Aachen Tel : +4917685132057 [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
