rk 14263
From: Bioc-devel on behalf of Bhagwat,
Aditya
Sent: Tuesday, October 15, 2019 8:15 AM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] Converting gene ids to GRanges - ensembl centric TxDb
missing for human
Dear BioC devel,
I want to convert geneids to GRanges
rk 14263
From: Bioc-devel on behalf of Bhagwat,
Aditya
Sent: Tuesday, October 15, 2019 8:15 AM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] Converting gene ids to GRanges - ensembl centric TxDb
missing for human
Dear BioC devel,
I want to convert geneids to GRanges
Dear BioC devel,
I want to convert geneids to GRanges by doing:
GenomicFeatures::genes(txdb)[geneids]
Works wonderfully for mouse, with entrezgene as well ensemblgene-centric TxDbs:
txdb <-
TxDb.Mmusculus.UCSC.mm10.knownGene::TxDb.Mmusculus.UCSC.mm10.knownGene
