Hi all,
I have a package `pkgndep` (
https://cran.r-project.org/web/packages/pkgndep/index.html) which can make
a dependency heatmap for a specific package. As shown in the following
figure for minfi package (version 1.30.0)
https://jokergoo.github.io/pkgndep/stat/image/minfi.png
Rows are the
hi,
about a year ago we had a developer's forum session devoted to this
subject, you might find useful the discussion we had starting on minute
29th here:
https://www.youtube.com/watch?v=xsM4nN85cok
part of the result of that discussion is in section 7 of this vignette:
i advocated pkgnet and included a png but email seems to have been rejected
On Wed, Mar 3, 2021 at 7:29 AM Kasper Daniel Hansen <
kasperdanielhan...@gmail.com> wrote:
> I am happy to engage in a discussion about this, although I'm not sure that
> I am ultimately interested in having two
I am happy to engage in a discussion about this, although I'm not sure that
I am ultimately interested in having two packages.
But first I would like to look at some dependency graphs. I am wondering
what makes the dependency tree this big (and my tree is smaller than yours,
but still big:
Dear Bioc developers,
I have been developing different packages to analyze DNA methylation. In
all of them, I have used minfi's class GenomicRatioSet to manage DNA
methylation data, in order to take profit of the features of
RangedSummarizedExperiment.
Although I am very happy with the potential
