Thank you very much for your effort!
Best regards and happy new year!
Jacopo
Il mar 26 dic 2023, 12:59 Kern, Lori ha
scritto:
> Sorry for the delay. These environment variables should be set now on the
> Single Package Builder.
>
> Lori Shepherd - Kern
>
> Bioconductor Core Team
>
> Roswell
Sorry for the delay. These environment variables should be set now on the
Single Package Builder.
Lori Shepherd - Kern
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
Great!
Thank you very much for this news!
Best regards,
Jacopo
Il ven 15 dic 2023, 15:36 Kern, Lori ha
scritto:
> I can update the SPB to have that environment variable set. I will also
> cross check it with the current variables set on the daily builder.
> It may not be until next week that
I can update the SPB to have that environment variable set. I will also cross
check it with the current variables set on the daily builder.
It may not be until next week that it is implemented.
Cheers,
Lori Shepherd - Kern
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Regarding the Renviron file i have seen on the GitHub repository of SPB
that indeed it is not using the IS_BIOC_BUILD_MACHINE env variable. How
should i do in order to pass the checks without errors for my package in
submission?
Kind regards,
Jacopo
Il mer 13 dic 2023, 00:48 Jacopo Ronchi ha
Dear Hervé,
Thank you very much for your answer. Regarding the issue that my package
encounters during the building on SPB i had the same doubt. Indeed when i
include that variable locally in my Renviron file everything works as
expected (tests that should be skipped on Bioconductor are indeed
Hi Jacopo,
testthat::skip_on_bioc() relies on the IS_BIOC_BUILD_MACHINE environment
variable to know whether it's on a BioC build machine or not.
This environment variable is defined during the daily build via the
Renviron.bioc file. Note that a link to this file is provided on the
individual
Dear Developers,
I am currently in the process of submitting my package on Bioconductor and
I am facing some issues during the R CMD check on the Bioconductor Build
System. Since I was not able to find any answers to my doubts, I decided to
ask for your help before doing anything wrong.
The
