Re: [Bioc-devel] About the reproducibility of BioC server environment

2018-11-06 Thread Kasper Daniel Hansen
In my experience, if I aggressively update my development installation of Bioconductor (including occasional updates of R-devel when appropriate) I can usually replicate most-all failures on the build server which has the same OS as my local machine. It does require aggressive updating though.

Re: [Bioc-devel] About the reproducibility of BioC server environment

2018-11-06 Thread Martin Morgan
Thanks for the comments. A docker image doesn't help with differences between operating systems. A docker image wouldn't be practical for the build system, where there are 1000's of packages installed. A docker image would need to be updated daily, since that is what the build system does;

[Bioc-devel] About the reproducibility of BioC server environment

2018-11-06 Thread 露崎 弘毅
Dear Bioc Core Team I have created many Bioconductor packages, but it is always hard to pass the R CMD CHECK/BiocCheck. Especially, it is still difficult to construct the identical environment of single/daily package builder in the local machine. Sometimes the error is caused by the