If it were me I might update version
BiocManager::install(version="3.10")
...
Update xxx packages [y/n]: n
Confirm I've got the right version
BiocManager::version()
and then recover the URLs
BiocManager::repositories()
as arguments to install.packages(). It doesn't make sense to ask for
On Thu, Oct 31, 2019 at 11:52 AM James W. MacDonald wrote:
>
> The main goal for BiocManager is to help end users ensure that their R/BioC
> installation is consistent for the version of R that they are using. So by
> definition, any packages that are outside the versions for a given R/BioC
>
The main goal for BiocManager is to help end users ensure that their R/BioC
installation is consistent for the version of R that they are using. So by
definition, any packages that are outside the versions for a given R/BioC
installation should be up or down-graded to make the installation valid.
(posting this here since I think it's not a support question per se)
Hi, I just started an upgrade from Bioc 3.9 to 3.10 on my local R 3.6.1 setup:
> BiocManager::install(version = "3.10")
Upgrade 73 packages to Bioconductor version '3.10'? [y/n]: y
Bioconductor version 3.10 (BiocManager
