Done!
On Wed, Mar 12, 2014 at 5:01 PM, Martin Morgan wrote:
> On 03/12/2014 08:18 AM, Laurent Gatto wrote:
>>
>>
>>> Should we then just drop \RequirePackage{helvet} from BiocStyle?
>>
>>
>> That seems a reasonable solution to me.
>
>
> yep! Martin
>
>>
>> Laurent
>>
>>> Cheers,
>>> Andrzej
>>
>>
On 03/12/2014 08:18 AM, Laurent Gatto wrote:
Should we then just drop \RequirePackage{helvet} from BiocStyle?
That seems a reasonable solution to me.
yep! Martin
Laurent
Cheers,
Andrzej
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> Should we then just drop \RequirePackage{helvet} from BiocStyle?
That seems a reasonable solution to me.
Laurent
> Cheers,
> Andrzej
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Should we then just drop \RequirePackage{helvet} from BiocStyle?
Cheers,
Andrzej
On Wed, Mar 12, 2014 at 3:27 PM, Kasper Daniel Hansen
wrote:
> Whatever we choose, we should discourage the use of other fonts: one of the
> advantages of bioc style is to make it easy to compiler on other computers
Whatever we choose, we should discourage the use of other fonts: one of the
advantages of bioc style is to make it easy to compiler on other computers.
Fonts can be hard to deal with on some tex systems, especially if you
don't have root access. Having a "nice" font is not worth the added
complex
> Hi Laurent, Martin,
>
> thank you for bringing this up! As pointed out by Martin, currently
> the 'helvet' package gets overridden by Sweave, so this setting
> affects only the knitr output.
>
> My feeling is that the default font style should be the same
> regardless of the engine used. Too kee
Hi Laurent, Martin,
thank you for bringing this up! As pointed out by Martin, currently
the 'helvet' package gets overridden by Sweave, so this setting
affects only the knitr output.
My feeling is that the default font style should be the same
regardless of the engine used. Too keep thing simple,
[...]
> Seems like an interaction between the 'helvet' package (used by BiocStyle)
> and
> the 'ae' package (used by Sweave). Get knitr-like output with either
> \usepackage[noae]{Sweave} or by placing \usepackage{Sweave} before
> \usepackage{helvet} (i.e., before the BiocStyle() chunk).
[.
On 03/11/2014 10:38 AM, Laurent Gatto wrote:
Dear all,
Compiling the following with Sweave
\documentclass{article}
<>=
BiocStyle::latex()
@
\bioctitle{Hello world}
\begin{document}
\maketitle
\section{Section}
Some text
<>=
print("Hello world")
@
\end{document}
$ R CMD Sweave --engine=utils::
Dear all,
Compiling the following with Sweave
\documentclass{article}
<>=
BiocStyle::latex()
@
\bioctitle{Hello world}
\begin{document}
\maketitle
\section{Section}
Some text
<>=
print("Hello world")
@
\end{document}
$ R CMD Sweave --engine=utils::Sweave --pdf test.Rnw
and this one with knitr
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