Re: [Bioc-devel] Build issue on nebbiolo2 for DEWSeq

2023-11-15 Thread Hervé Pagès
Hi Sudeep, I don't see magrittr in any of the Depends, Imports, or Suggests field of DEWSeq. Remember that any function or symbol you use from another package requires that you declare that package in one of these fields. In this case, since you only use %>% in the vignette, then you only

Re: [Bioc-devel] Build issue on nebbiolo2 for DEWSeq

2023-11-15 Thread Kristian Ullrich
Dear Sudeep, Have you tried to use the R basic pipe "|>" instead of the magrittr pipe? If you use it directly in your R function you could add in the corresponding function the following line: @importFrom magrittr %>% Best regards Kristian -- Kristian Ullrich, Ph.D. Max Planck Institute For

[Bioc-devel] Build issue on nebbiolo2 for DEWSeq

2023-11-14 Thread Biohentze
Dear all, We are facing build issue on nebbiolo2 on our vignette for the package DEWSeq. The issue is that we use magittr pipe (%>%) in the vignette and the issue occurs only on the linux machine. Checks, builds and installation completes successfully on windows and mac. Here is the complete