Re: [Bioc-devel] Changes not applied in bioc source

2019-12-05 Thread Turaga, Nitesh
Hi Vinh, I checked the installation from BiocManager. It seems the same version 1.1.2 is being installed by BiocManager as well as from the Bioconductor git repo. Can you tell me how to test for this bug? I just ran the vignette but don't see an error. It will be more helpful for us to debug

Re: [Bioc-devel] Changes not applied in bioc source

2019-12-05 Thread James W. MacDonald
The changes you made seem to be reflected in the version of PhyloProfile that I get: > sortInputTaxa function (taxonIDs = NULL, rankName, refTaxon = NULL, taxaTree = NULL) { ncbiID <- fullName <- abbrName <- NULL if (missing(rankName)) return("No taxonomy rank name given!")

[Bioc-devel] Changes not applied in bioc source

2019-12-05 Thread Vinh Tran
Dear Bioc Team, I am maintainer of the PhyloProfile package. Last week I made a bug fixed for the package and push it into both release_3_10 as well as the master (development) branch. The build and check for both PR were successful and I can see the new source files with the correct version