Re: [Bioc-devel] DMRcate: TIMEOUT

Thanks Martin and Sean, found the culprit. It's DSS::DMLtest(). Looks like it takes much longer under the new version. I should be able to attenuate the vignette input considerably so hopefully it will now beat the timeout. For R/3.3.3, on a bsseq object with 5000 CpG sites, DMLtest() under

Re: [Bioc-devel] DMRcate: TIMEOUT

On 05/31/2017 06:18 AM, Sean Davis wrote: Hi, Tim. Have you tried building the vignette independently, separate from the package build process? Doing so might give you some hints about which code blocks are the culprits. Also > Stangle("DMRcate.Rnw") Writing to file DMRcate.R >

Re: [Bioc-devel] DMRcate: TIMEOUT

Hi, Tim. Have you tried building the vignette independently, separate from the package build process? Doing so might give you some hints about which code blocks are the culprits. Sean On Wed, May 31, 2017 at 1:24 AM, Tim Peters wrote: > Hi bioc, > > Recently, under

[Bioc-devel] DMRcate: TIMEOUT

Hi bioc, Recently, under R/3.4.0, the newest version of DMRcate is taking 47mins to build on my local machine and I am getting TIMEOUTs on the build on the checkResults page http://master.bioconductor.org/checkResults/3.5/bioc-LATEST/DMRcate/malbec2-buildsrc.html. I have not made any changes