Re: [Bioc-devel] Error for voom() in limma package

2019-06-18 Thread Gordon K Smyth
Dear Lan, When reporting a possible bug in an R package, the minimum information that is usually reported is the version numbers of R and the package (using sessionInfo) and the code leading up to the error. You haven't provided any of that information, so I hope you don't mind if I take a

Re: [Bioc-devel] Error for voom() in limma package

2019-06-18 Thread James W. MacDonald
This mailing list is for discussions about package development, not bug reports. If you really think you have found a bug in voom (you probably haven't), submit a self-contained example that produces the error on https://support.bioconductor.org, or better yet, send it to Gordon Smyth directly.

[Bioc-devel] Error for voom() in limma package

2019-06-18 Thread Lan Huong Nguyen
Hi, I am having an issue with running voom function. I believe it is caused be the line 73 in the voom.R file. f <- approxfun(l, rule = 2, ties = list("ordered", mean)) The third argument causes the following error: Error in get(as.character(FUN), mode = "function", envir = envir) : object