You are welcome. Begin forwarded message:
From: "Oghabian, Ali" <ali.oghab...@helsinki.fi<mailto:ali.oghab...@helsinki.fi>> Subject: Re: Getting w+r access for my package (IntEREst); svn/git transfer problem (Problem remains unsloved) Date: September 14, 2017 at 12:19:37 PM EDT To: "Turaga, Nitesh" <nitesh.tur...@roswellpark.org<mailto:nitesh.tur...@roswellpark.org>> Hi again! It worked just now 😊 Thank you ! -- Ali Oghabian Bioinformatics, RNA-splicing laboratory (Room 4024B), Institute of Biotechnology, P.O.Box 56 (Viikinkaari 5), 00014 University of Helsinki Finland. Email: ali.oghab...@helsinki.fi<https://webmail.helsinki.fi/horde/imp/dynamic.php?page=mailbox#> Phone: +358 50 4484569 ________________________________ From: Turaga, Nitesh <nitesh.tur...@roswellpark.org<mailto:nitesh.tur...@roswellpark.org>> Sent: 14 September 2017 19:17:47 To: Oghabian, Ali Subject: Re: Getting w+r access for my package (IntEREst); svn/git transfer problem (Problem remains unsloved) The script runs at noon EST, takes a few mins. But I see that your key is in the system. Please try again. Nitesh > On Sep 14, 2017, at 12:13 PM, Oghabian, Ali > <ali.oghab...@helsinki.fi<mailto:ali.oghab...@helsinki.fi>> wrote: > > Hi again dear Nitesh! > Thanks for your reply. I actually resubmitted with the correct svn ID > (a.oghabian) but the problem still remains unsloved. > > when I run 'ssh -T' command I get permission denied: > > ssh -T g...@git.bioconductor.org<mailto:g...@git.bioconductor.org> | grep > IntEREst > Permission denied (publickey). > > I also can not push the latest changes to upstream: > > git push upstream master > Permission denied (publickey). > fatal: Could not read from remote repository. > > Please make sure you have the correct access rights > and the repository exists. > > Since it is mentioned on the Goggle form that it takes a day for the submit > to happen, I was wondering if my latest submission of my public key to the > google form (which took place about 20 hours ago) is affected and successful. > Note that my public ssh key is available in my github account (i.e. gacatag). > > Cheers, > > Ali > -- > > Ali Oghabian > Bioinformatics, > > RNA-splicing laboratory (Room 4024B), > Institute of Biotechnology, > P.O.Box 56 (Viikinkaari 5), > 00014 University of Helsinki > Finland. > > Email: ali.oghab...@helsinki.fi<mailto:ali.oghab...@helsinki.fi> > Phone: +358 50 4484569 > From: Nitesh <nitesh.tur...@gmail.com<mailto:nitesh.tur...@gmail.com>> > Sent: 13 September 2017 22:41:51 > To: Oghabian, Ali > Cc: bioc-devel@r-project.org<mailto:bioc-devel@r-project.org> > Subject: Re: Getting w+r access for my package (IntEREst); svn/git transfer > problem. > > You have submitted an incorrect SVN ID when you filled in the google form. > Please check your submission. > > Your svn id is a.oghabian, you submitted oghabian. > > Nitesh (Please reply to: > nitesh.tur...@roswellpark.org<mailto:nitesh.tur...@roswellpark.org>) > > > > On Wed, 13 Sep 2017 at 15:37 Oghabian, Ali > <ali.oghab...@helsinki.fi<mailto:ali.oghab...@helsinki.fi>> wrote: > Dear Nitesh, Hi! > Sorry to email you, but I have both read your slides > (https://www.bioconductor.org/help/course-materials/2017/BioC2017/DDay/Workshop/GitWithTheProgram.pdf) > togetehr with the document page and FAQ page regarding svn to git conversion > for updating the Bioconductor packages but I could not managed to make it > work! > > I have been struggling with updating and pushing the changes to my package > (i.e. IntEREst) > in...@git.bioconductor.org<mailto:in...@git.bioconductor.org>. I used to use > SVN for this purpose and now I am trying to change to git while at the same > time updating the package on github (my github id is 'gacatag'). > > I did submit my public SSH key to the google doc several times during the > passed 2 days but in the end I never managed to get writing rights for my > package. Yesterday, I actually obtained "Read" rights but after building a > new key and adding it to the google doc, I lost the "Read" rights too. > > I would like to use the same public key that exists in my github profile > (i.e. gacatag). Just now, I added the public key once more but when I run > 'ssh -T' comand this happens: > > ssh -T g...@git.bioconductor.org<mailto:g...@git.bioconductor.org> | grep > IntEREst > Permission denied (publickey). > > Git remote also returns: > > git remote -v > origin g...@github.com<mailto:g...@github.com>:gacatag/IntEREst.git (fetch) > origin g...@github.com<mailto:g...@github.com>:gacatag/IntEREst.git (push) > upstream > g...@git.bioconductor.org<mailto:g...@git.bioconductor.org>:packages/IntEREst.git > (fetch) > upstream > g...@git.bioconductor.org<mailto:g...@git.bioconductor.org>:packages/IntEREst.git > (push) > > Also the access settings of the ssh key files are as follows: > > ls -l ~/.ssh/id_rsa* > -r--------. 1 oghabian oghabian 3243 13.9. 15:09 /home/oghabian/.ssh/id_rsa > -rwx------. 1 oghabian oghabian 750 12.9. 16:01 > /home/oghabian/.ssh/id_rsa.pub > > The changes were successfully pushed to my package on my github account > (origin) but for the 'upstream' I get the following message. > > git push upstream master > Permission denied (publickey). > fatal: Could not read from remote repository. > > Please make sure you have the correct access rights > and the repository exists. > > I would appreciate if you could assist me on how to get read and write rights > for my package in Bioconductor so that I could push the changes. > Cheers, > > Ali > -- > > Ali Oghabian > Bioinformatics, > > RNA-splicing laboratory (Room 4024B), > Institute of Biotechnology, > P.O.Box 56 (Viikinkaari 5), > 00014 University of Helsinki > Finland. > > Email: ali.oghab...@helsinki.fi<mailto:ali.oghab...@helsinki.fi> > Phone: +358 50 4484569 > -- > Nitesh Turaga This email message may contain legally privileged and/or confidential information. 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