Further to this point, when comparing to the latest OBO from geneontology,
it looks like the current GO.db has just over 1000 GO IDs that are not in
GO any longer, and almost 500 GO IDs are in the GO OBO file that are not in
GO.db
On Wed, Apr 1, 2020 at 12:11 PM James W. MacDonald wrote:
> Are
Are we still using the scripts in BioconductorAnnotationPipeline/go/scripts
to download GO data and create the GO.db package?
If so, that is likely a problem that will only get worse with time.
Apparently geneontology.org is no longer generating the SQL dumps that the
go scripts rely on, so
