Re: [Bioc-devel] Help with R CMD check NOTEs

2017-10-18 Thread Pariksheet Nanda
Hi Anusha, On Wed, Oct 18, 2017 at 2:30 PM, Anusha Nagari < anusha.nag...@utsouthwestern.edu> wrote: > > Can you please let me know how to go about the following NOTE. Or if this is something that should be really taken care of for a successful package build and install: > > * checking

Re: [Bioc-devel] Help with R CMD check NOTEs

2017-10-18 Thread Anusha Nagari
Hi Herve, Thank you for your response. >In other words putting everything in Imports can hurt >usability/friendliness. The approach should be more nuanced. It's >good that the 'R CMD check' NOTE reminds us about the Depends vs >Imports trade-off but for Bioconductor packages the choices made >by

Re: [Bioc-devel] Help with R CMD check NOTEs

2017-10-18 Thread Hervé Pagès
Hi, On 10/18/2017 09:19 AM, Pariksheet Nanda wrote: Hi Anusha On Wed, Oct 18, 2017 at 12:04 PM, Anusha Nagari wrote: Depends: includes the non-default packages: ‘MASS’ ‘parallel’ ‘S4Vectors’ ‘IRanges’ ‘GenomeInfoDb’ ‘GenomicRanges’ ‘GenomicAlignments’

Re: [Bioc-devel] Help with R CMD check NOTEs

2017-10-18 Thread Pariksheet Nanda
Hi Anusha On Wed, Oct 18, 2017 at 12:04 PM, Anusha Nagari wrote: > > Depends: includes the non-default packages: > ‘MASS’ ‘parallel’ ‘S4Vectors’ ‘IRanges’ ‘GenomeInfoDb’ > ‘GenomicRanges’ ‘GenomicAlignments’ ‘rtracklayer’ > Adding so many packages to the