Re: [Bioc-devel] Is it OK for Rmd package vignettes to be rendered as PDF?

2016-08-22 Thread Ramon Diaz-Uriarte
On Fri, 19-08-2016, at 15:41, Sean Davis wrote: >> On Aug 19, 2016, at 9:10 AM, Ramon Diaz-Uriarte wrote: >> >> >> >> >> On Wed, 17-08-2016, at 15:08, Sean Davis wrote: On Aug 17, 2016, at 8:55 AM, Martin Morgan

Re: [Bioc-devel] Is it OK for Rmd package vignettes to be rendered as PDF?

2016-08-19 Thread Henrik Bengtsson
On Thu, Aug 18, 2016 at 4:45 PM, Wolfgang Huber wrote: > > >> On 17 Aug 2016, at 13:02, Henrik Bengtsson >> wrote: >> >> R CMD build, which is what triggers vignette building, only supports one >> output file (HTML or PDF) per vignette. It will

Re: [Bioc-devel] Is it OK for Rmd package vignettes to be rendered as PDF?

2016-08-19 Thread Ramon Diaz-Uriarte
On Thu, 18-08-2016, at 16:45, Wolfgang Huber wrote: >> On 17 Aug 2016, at 13:02, Henrik Bengtsson >> wrote: >> >> R CMD build, which is what triggers vignette building, only supports one >> output file (HTML or PDF) per vignette. It will

Re: [Bioc-devel] Is it OK for Rmd package vignettes to be rendered as PDF?

2016-08-19 Thread Ramon Diaz-Uriarte
On Wed, 17-08-2016, at 15:08, Sean Davis wrote: >> On Aug 17, 2016, at 8:55 AM, Martin Morgan >> wrote: >> >> On 08/17/2016 07:02 AM, Henrik Bengtsson wrote: >>> R CMD build, which is what triggers vignette building, only supports one >>>

Re: [Bioc-devel] Is it OK for Rmd package vignettes to be rendered as PDF?

2016-08-18 Thread Wolfgang Huber
> On 17 Aug 2016, at 13:02, Henrik Bengtsson wrote: > > R CMD build, which is what triggers vignette building, only supports one > output file (HTML or PDF) per vignette. It will basically ignore duplicate > output formats. This is by design / legacy reasons.

Re: [Bioc-devel] Is it OK for Rmd package vignettes to be rendered as PDF?

2016-08-17 Thread Martin Morgan
On 08/17/2016 07:02 AM, Henrik Bengtsson wrote: R CMD build, which is what triggers vignette building, only supports one output file (HTML or PDF) per vignette. It will basically ignore duplicate output formats. This is by design / legacy reasons. Technically it wouldn't be hard to add support

Re: [Bioc-devel] Is it OK for Rmd package vignettes to be rendered as PDF?

2016-08-17 Thread Kasper Daniel Hansen
see Henrik's answer. Just adding that I would also like to see support for multiple formats, particularly HTML and PDF from a single source. Best, Kasper On Wed, Aug 17, 2016 at 1:02 PM, Henrik Bengtsson < henrik.bengts...@gmail.com> wrote: > R CMD build, which is what triggers vignette

Re: [Bioc-devel] Is it OK for Rmd package vignettes to be rendered as PDF?

2016-08-17 Thread Henrik Bengtsson
R CMD build, which is what triggers vignette building, only supports one output file (HTML or PDF) per vignette. It will basically ignore duplicate output formats. This is by design / legacy reasons. Technically it wouldn't be hard to add support for multiple output formats, but that would

[Bioc-devel] Is it OK for Rmd package vignettes to be rendered as PDF?

2016-08-17 Thread Ramon Diaz-Uriarte
Dear All, I am considering rewriting the vignette of one BioC package I maintain as Rmd (it is currently Rnw). But I would like that the entry under "Documentation" contain a PDF of the vignette; it can ideally also contain the HTML version too, but I do not want it to not have the PDF[1]. I