Re: [Bioc-devel] Issue with change in random sampling

2021-09-24 Thread Kasper Daniel Hansen
The random number generator is tracked by a global state, which is a violation of functional programming. This is unavoidable. This is why we really don't want packages to EVER touch the random number state for example by setting the seed. You can also be affected by this if any function you

Re: [Bioc-devel] Issue with change in random sampling

2021-09-24 Thread Martin Morgan
This does sound like a BiocParallel side effect, and I would suggest holding off for another week so for the BiocParallel changes to be finalized. On 9/24/21, 2:05 PM, "Bioc-devel" wrote: Hello, My package `clusterExperiment` has not changed but is hitting errors on the devel branch. I’ve

[Bioc-devel] Issue with change in random sampling

2021-09-24 Thread Elizabeth Purdom
Hello, My package `clusterExperiment` has not changed but is hitting errors on the devel branch. I’ve pinpointed it to the fact that a small dataset I am running the tests on is randomly subsetted from a larger subset and is no longer choosing the same observations. I have already in previous