Re: [Bioc-devel] Large vignettes

2023-01-12 Thread Lambda Moses
Vincent made some good points. I have experiences writing this kind of books, and I can testify. I have written the Museum of Spatial Transcriptomics book, and the Voyager vignettes probably will collectively become book sized as we are adding more vignettes about different technologies. It

Re: [Bioc-devel] Large vignettes

2023-01-12 Thread Lambda Moses
Vincent made some good points. I have experiences writing this kind of books, and I can testify. I have written the Museum of Spatial Transcriptomics book, and the Voyager vignettes probably will collectively become book sized as we are adding more vignettes about different technologies. It

Re: [Bioc-devel] Large vignettes

2023-01-12 Thread Vincent Carey
On Thu, Jan 12, 2023 at 5:29 AM Lluís Revilla wrote: > Hi all, > > Perhaps instead of long vignettes, it would be better to use a book hosted > and in sync with the packages at Bioconductor. > There are already a few: https://www.bioconductor.org/books/release/ > But I was not able to find how

Re: [Bioc-devel] Large vignettes

2023-01-12 Thread Lluís Revilla
Hi all, Perhaps instead of long vignettes, it would be better to use a book hosted and in sync with the packages at Bioconductor. There are already a few: https://www.bioconductor.org/books/release/ But I was not able to find how to submit such bookdowns to Bioconductor (I briefly searched the

Re: [Bioc-devel] Large vignettes

2023-01-04 Thread Vincent Carey
I am glad you brought this up here, and I welcome further discussion on this mailing list. It is important to understand the constraints on development that arise from Bioconductor's package guidelines. I don't think we want to change the limits on package payload size without understanding the

Re: [Bioc-devel] Large vignettes

2023-01-04 Thread Lambda Moses
Hi Adam, I also got this problem, and I would like some input from Bioc Core Team. I worked around it by writing a minimal vignette in the main branch. Then I made a documentation branch, where I have the same code as in main branch, but with more elaborate vignettes used to build a pkgdown

[Bioc-devel] Large vignettes

2023-01-03 Thread Park, Adam Keebum
Dear community, I hope wonderful things happen to you in the new year. I guess this issue is well-known. BiocCheck works on a output of R CMD build, which means vignettes are rendered in html forms. Those sometimes include many images easily exceeding 5mb limit, failing the BiocCheck with a