Re: [Bioc-devel] Opinions on a meta-annotation package

2021-01-08 Thread Panagiotis Moulos
Dear Kasper and Hervé, Thank you for your feedback and apologies for reviving such an old thread. Hervé, you are right, apologies for the confusion in the message title and content, it is a software package for creating/retrieving specific annotation elements and not an annotation package. After

Re: [Bioc-devel] Opinions on a meta-annotation package

2019-10-24 Thread Kasper Daniel Hansen
>From your description it very much sounds like creating a new package is the way to go. On Thu, Oct 24, 2019 at 3:03 PM Pages, Herve wrote: > Hi Panagiotis, > > Avoiding code repetition is always a good idea. An alternative to the > creation of a 3rd package would be to have one of the 2

Re: [Bioc-devel] Opinions on a meta-annotation package

2019-10-24 Thread Pages, Herve
Hi Panagiotis, Avoiding code repetition is always a good idea. An alternative to the creation of a 3rd package would be to have one of the 2 packages depend on the other. If that is not a good option (and there might be some valid reasons for that) then yes, factorizing out the repeated stuff

[Bioc-devel] Opinions on a meta-annotation package

2019-10-20 Thread Panagiotis Moulos
Dear developers, I maintain two packages (metaseqR, recoup) and about to submit an enhanced (but different in many points, thus a new package) version of the 1st (metaseqR2). During their course of development, maintenance and usage, these packages have somehow come to use a common underlying