with built bioconductor packages (for
continuous integration)
On 11/09/2014 07:23 AM, Laurent Gautier wrote:
Hi,
Continuous integration is a convenient way to automate some of the
steps
necessary to ensure quality software.
Popular ways to do it create a vanilla virtual machine 9VM
On 11/09/2014 11:06 AM, Dan Tenenbaum wrote:
- Original Message -
From: Martin Morgan mtmor...@fredhutch.org
To: Laurent Gautier lgaut...@gmail.com, bioc-devel@r-project.org
Sent: Sunday, November 9, 2014 8:26:48 AM
Subject: Re: [Bioc-devel] PPA with built bioconductor packages
, 2014 8:26:48 AM
Subject: Re: [Bioc-devel] PPA with built bioconductor packages (for
continuous integration)
On 11/09/2014 07:23 AM, Laurent Gautier wrote:
Hi,
Continuous integration is a convenient way to automate some of the
steps
necessary to ensure quality software.
Popular ways to do
:48 AM
Subject: Re: [Bioc-devel] PPA with built bioconductor packages (for
continuous integration)
On 11/09/2014 07:23 AM, Laurent Gautier wrote:
Hi,
Continuous integration is a convenient way to automate some of the
steps
necessary to ensure quality software.
Popular ways to do
-
From: Martin Morgan mtmor...@fredhutch.org
To: Laurent Gautier lgaut...@gmail.com ,
bioc-devel@r-project.org
Sent: Sunday, November 9, 2014 8:26:48 AM
Subject: Re: [Bioc-devel] PPA with built bioconductor packages (for
continuous integration)
On 11/09/2014 07:23 AM, Laurent Gautier
-
From: Laurent Gautier lgaut...@gmail.com
To: Martin Morgan mtmor...@fredhutch.org
Cc: bioc-devel@r-project.org, Dan Tenenbaum dtene...@fredhutch.org
Sent: Monday, November 10, 2014 9:57:00 AM
Subject: Re: [Bioc-devel] PPA with built bioconductor packages (for
continuous integration
Hi,
Continuous integration is a convenient way to automate some of the steps
necessary to ensure quality software.
Popular ways to do it create a vanilla virtual machine 9VM) with a Linux
distribution, and scripts prepares the VM with 3rd-party dependencies
required by the software. For example,
Yes. The same sort of thing happens when I send code to others. The library
dependencies often take longer to install than the code takes to run, and these
are not trivial analyses (thousands of cases across dozens of studies with
millions to billions of data points). The idea of a PPA in a
