Re: [Bioc-devel] Problem with GRanges

2013-10-15 Thread Kristoffer Knudsen
That solved it! Thanks! :D On Oct 15, 2013, at 2:04 PM, Michael Lawrence wrote: > You need a new version of GenomicRanges, because IRanges changed. > Unfortunately there is no way to force a package update when a dependency > changes. Sorry. > > > On Tue, Oct 15, 2013 at 1:25 AM, Kristoffer

Re: [Bioc-devel] Problem with GRanges

2013-10-15 Thread Martin Morgan
On 10/15/2013 05:06 AM, Martin Morgan wrote: On 10/15/2013 05:04 AM, Michael Lawrence wrote: You need a new version of GenomicRanges, because IRanges changed. Unfortunately there is no way to force a package update when a dependency changes. Sorry. BiocInstaller::biocLite() can help (diagnose)

Re: [Bioc-devel] Problem with GRanges

2013-10-15 Thread Martin Morgan
On 10/15/2013 05:04 AM, Michael Lawrence wrote: You need a new version of GenomicRanges, because IRanges changed. Unfortunately there is no way to force a package update when a dependency changes. Sorry. BiocInstaller::biocLite() can help (diagnose) these problems. Martin On Tue, Oct 15, 20

Re: [Bioc-devel] Problem with GRanges

2013-10-15 Thread Michael Lawrence
You need a new version of GenomicRanges, because IRanges changed. Unfortunately there is no way to force a package update when a dependency changes. Sorry. On Tue, Oct 15, 2013 at 1:25 AM, Kristoffer Knudsen < kristoffer.knud...@bric.ku.dk> wrote: > I seem to have problems with the latest update

[Bioc-devel] Problem with GRanges

2013-10-15 Thread Kristoffer Knudsen
I seem to have problems with the latest update of GRanges: > library('GenomicRanges') > packageVersion('GenomicRanges') [1] '1.13.54' > GRanges( seqnames='chr1', ranges=IRanges(start=10,end=100),strand='+') GRanges with 1 range and 0 metadata columns: seqnamesranges strand